New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4532499 =	57 (0.950)	4 (0.070)	4/274	8.4	7.4%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	CP009273	4532813 =	46 (0.820)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  CP009273/4532359‑4532646                                                                                                                                             |                                                                                                                                                      tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTgg                                                                                                                                                    >  1:258114/1‑144 (MQ=255)         aCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaaa                                                                                                                                            >  1:580059/1‑143 (MQ=255)          ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt                                                                                                                                           >  1:699526/1‑144 (MQ=255)           cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGTCAAATTg                                                                                                                                          >  1:161462/1‑144 (MQ=255)           cGCCAGTAATGCAGCACGTTTTGACAGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                     <  2:588433/149‑1 (MQ=255)             ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                   <  2:651798/149‑1 (MQ=255)              cAGTAATGCTGCACGTTTAGCCGGATAATAGGAAAGAAATAATCTCAAAAAAAAAAAAAAAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                       <  1:597878/144‑1 (MQ=255)                   aTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa                                                                                                                             <  2:275288/149‑1 (MQ=255)                    tgctgcTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                                 >  1:883975/1‑144 (MQ=255)                    tgctgcTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAAAGAAACATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAACAAACAAATAAATACAAGACCATTGGGGCCAAACTGTCCATAACa                                                                                                                                 >  1:590236/1‑144 (MQ=255)                              tttGCGGGATTATGGGAAAGAAATAATCTCAAAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTGAACTTATTGATAATAAAGATAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                       <  1:170166/144‑1 (MQ=255)                              tttGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt                                                                                                                       <  1:776106/144‑1 (MQ=255)                                  ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                              >  2:255962/1‑149 (MQ=255)                                   cGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt                                                                                                             >  2:996954/1‑149 (MQ=255)                                    ggATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt                                                                                                                 <  1:715353/144‑1 (MQ=255)                                     gATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                           >  2:985867/1‑149 (MQ=255)                                        tATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCAAAACTGTCCATATCATAAATAAGTTACGTAttttt                                                                                                             >  1:273579/1‑144 (MQ=255)                                         aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                       <  2:297094/149‑1 (MQ=255)                                          tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                           <  1:29696/144‑1 (MQ=255)                                          tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg                                                                                                      <  2:318846/149‑1 (MQ=255)                                          tGGGAAAGAAATAATCTAATAAACGAAAAAATAAAAAGAGAACAGGGTTGATTTAACTTATGGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATGGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                           <  1:120101/144‑1 (MQ=255)                                           gggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTACTCAAGc                                                                                                     >  2:528512/1‑149 (MQ=255)                                           aggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGATGTTTGATTTAACTTATTGATAATAAAGTTAAAAAACCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAGTAAGTTACGTATTTTTtct                                                                                                          <  1:406052/143‑1 (MQ=255)                                             gaaagaaaTAATCTCATAAACGAAAAATTACAAAGCTCATTGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑t                                                                                                  >  2:250268/1‑149 (MQ=255)                                             gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑t                                                                                                  >  2:52129/1‑149 (MQ=255)                                                  aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑Taaaaa                                                                                             >  2:510692/1‑149 (MQ=255)                                                       atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑Taaaaa                                                                                             >  1:529186/1‑144 (MQ=255)                                                          tcATAAACGAAAAGTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTaaaa                                                                                     >  2:704702/1‑149 (MQ=255)                                                            aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTaaaaaa                                                                                   <  2:327491/149‑1 (MQ=255)                                                              aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAACGTGAAAGTAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACg                                                                                 <  2:496098/149‑1 (MQ=255)                                                                 cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACa                                                                              >  2:125162/1‑149 (MQ=255)                                                                   aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCGAGCA‑TAAAAATATTAAAAAACGACaaa                                                                            >  2:996612/1‑149 (MQ=255)                                                                    aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGGCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACaaaa                                                                           <  2:351792/149‑1 (MQ=255)                                                                       aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGc                                                                       <  2:302016/149‑1 (MQ=255)                                                                        ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACaaa                                                                            >  1:759362/1‑144 (MQ=255)                                                                        ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCa                                                                      >  2:821844/1‑149 (MQ=255)                                                                            aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTTTTCA‑TAAAAATATTAAAAAACGACAAAA‑AGc                                                                       >  1:162847/1‑144 (MQ=255)                                                                            aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACACCAAAA‑AGc                                                                       >  1:48758/1‑144 (MQ=255)                                                                               gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACt                                                               >  2:343819/1‑149 (MQ=255)                                                                                      ggTTTGATTTAACTTATTGATAATAAAATAAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGat                                                        <  2:284462/149‑1 (MQ=255)                                                                                                 aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTaa                                                  <  1:677048/144‑1 (MQ=255)                                                                                                    tATTGATAATAAAATTAAAAAAACAAAAAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTc                                          <  2:177110/149‑1 (MQ=255)                                                                                                      ttGATAATGAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTT‑AAAAGCATTTTGAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTa                                        >  2:753237/1‑149 (MQ=255)                                                                                                         ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTg                                     >  2:723226/1‑149 (MQ=255)                                                                                                                  ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCTATATCATAAATAAGTCACCTATTTTTTCGCAAGCA‑TAAAAATATTAAAAAACGAAAAAACACCAT‑TAACTGTTTGCTATGTACATTCTTTCTATTGTaaa                                 >  1:23681/1‑144 (MQ=255)                                                                                                                  taaaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                            <  2:254017/147‑1 (MQ=255)                                                                                                                    aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                          <  2:49903/149‑1 (MQ=255)                                                                                                                      aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTTTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                        <  2:641890/149‑1 (MQ=255)                                                                                                                          aCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATc                    <  2:533657/149‑1 (MQ=255)                                                                                                                           cAAATAAACACAAGCCCTGTGCGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTGCTCAAGAA‑TAAAACTATTAAAAAACGTCAAAA‑AGCGTCTACCTGCTCGTCTGGTGTTTTATTTCTATTGTAAATTAATTTca                        <  1:914335/144‑1 (MQ=255)                                                                                                                               taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               >  2:305756/1‑149 (MQ=255)                                                                                                                                aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAACTTAATTTCACATCACCTcc              >  2:408458/1‑149 (MQ=255)                                                                                                                                 aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTAACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAACTATTTCTATTGTAAATTAATTTCACATCAc                  <  1:644203/144‑1 (MQ=255)                                                                                                                                     cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtat         >  2:733780/1‑149 (MQ=255)                                                                                                                                      aaGACAATTGGGGCCAAACTGTCCATACCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata        <  2:172236/149‑1 (MQ=255)                                                                                                                                           atttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaa   <  2:655578/147‑1 (MQ=255)                                                                                                                                            aTTTGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTCTTGTTCGGGAAGTTCACATCACCTCCGCTATATGTaaa  <  2:762057/149‑1 (MQ=255)                                                                                                                                            aTTGGGGCCAAACTGTCCATATCATAAATAAGATACGTTTTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaaa  <  2:449194/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      TGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCA‑TAAAAATATTAAAAAACGACAAAA‑AGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  CP009273/4532359‑4532646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.