New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2223931 =53 (0.890)6 (0.110) 5/270 7.7 10.9% intergenic (‑67/‑172) dusC/yohJ tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein
?CP009273 2223961 = 49 (0.890)intergenic (‑97/‑142) dusC/yohJ tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACCAGAGAGTCAAGCACTCCCTCCATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGA  >  CP009273/2223816‑2224106
                                                                                                                                                 |                                                                                                                                                 
gCACCAGAGAGTCAAGCACTCCCTCCATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCGAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTAt                                                                                                                                                >  2:217195/1‑149 (MQ=255)
    cAGAGAGTCAAGCACTCCCTCCATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTa                                                                                                                                                 >  1:488626/1‑144 (MQ=255)
     agggagTCGAGCCGTCCCTGCATCGGTGCCAATAACACGCGGATATCATAAACAGAAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTAt                                                                                                                                                <  1:44211/141‑1 (MQ=255)
     agagagTCAAGCACTCCCTCCATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCACAGAGGGATTGCTGCAAACTGCAATCCCTCTCTAt                                                                                                                                                >  1:322610/1‑144 (MQ=255)
               gccccccctccATCGGTGCCAGTAACACCCGCATATCAGCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCt                                                                                                                                 <  2:461527/144‑1 (MQ=255)
               gCACTCCCTCCATCGGGGCCAGTAACACACGCCTCGCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCt                                                                                                                                 <  2:301703/149‑1 (MQ=255)
                       tccATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGCTGTATGccccaa                                                                                                                              >  1:100174/1‑140 (MQ=255)
                        ccATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAACAGCGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGt                                                                                                                             <  1:4029/144‑1 (MQ=255)
                            cGGTGCCAGTAACACACGCATATCATCGCCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTgcgc                                                                                                                    <  2:264711/149‑1 (MQ=255)
                                  cAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTCTGTCTGAGTTCGCTGCGCATTGCg                                                                                                              >  2:281379/1‑149 (MQ=255)
                                  cAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCa                                                                                                                   <  1:371538/144‑1 (MQ=255)
                                   aGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGt                                                                                                             >  2:180922/1‑149 (MQ=255)
                                      aaCACACGCATATCATCACCCGCAAAAATATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGc                                                                                                               <  1:398954/144‑1 (MQ=255)
                                        cacacGCATATCATCACCCGCAGAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGt                                                                                                             <  1:590278/144‑1 (MQ=255)
                                          cacGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCg                                                                                                      <  2:585878/149‑1 (MQ=255)
                                            cGCATATCATCACCCGGAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCggg                                                                                                    <  2:471880/149‑1 (MQ=255)
                                                tatCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGc                                                                                                <  2:134502/149‑1 (MQ=255)
                                                    atcaACAGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAg                                                                                                 <  1:117833/144‑1 (MQ=255)
                                                      caCCCGTAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCg                                                                                               <  1:820676/144‑1 (MQ=255)
                                                         ccGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGACCGAAAAAATa                                                                                       >  2:784647/1‑149 (MQ=255)
                                                               aaaaaTGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATacacgcg                                                                                 >  2:868476/1‑143 (MQ=255)
                                                               aaaaaTGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCt                                                                                 >  2:603733/1‑149 (MQ=255)
                                                               aaaaaTGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCt                                                                                 >  2:542786/1‑149 (MQ=255)
                                                                    tGAGGCGCTCTGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAGGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCt                                                                                 >  1:445982/1‑144 (MQ=255)
                                                                     taGGCGCTAACATAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGAGCTg                                                                                >  1:528879/2‑144 (MQ=255)
                                                                         cgcTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTaa                                                                       <  2:320319/149‑1 (MQ=255)
                                                                                  aGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCgg                                                              <  2:357729/149‑1 (MQ=255)
                                                                                      ccTATGGTCCGCTGATTAAAGTTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCCATGCTTGATGTATGCCTGAGTTCGCTGCTCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGc                                                          <  2:336353/149‑1 (MQ=255)
                                                                                           ggTCAGCGGATTAACGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGtt                                                     <  2:661650/149‑1 (MQ=255)
                                                                                            gcacgcagATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGttt                                                    <  2:954439/142‑1 (MQ=255)
                                                                                            gTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGCTTTCTTAATGTGCTCGGTAGCCCGgtt                                                    >  2:182108/1‑149 (MQ=255)
                                                                                            gTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGttt                                                    >  2:956888/1‑149 (MQ=255)
                                                                                              cAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTa                                                  <  2:324250/149‑1 (MQ=255)
                                                                                                gCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCCTGATGGATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGtt                                                     <  1:807420/144‑1 (MQ=255)
                                                                                                       aaaGGTCTGCACAGAGGGATTGCTGCAAACACCAATCCATTTGGATGCTTGATGTATGCCTGAGATCGCCGAGGATTGCTTAATTTCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGaa                                              <  1:382511/144‑1 (MQ=255)
                                                                                                        aaGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGaattaatt                                        <  2:596007/149‑1 (MQ=255)
                                                                                                        aaGGTATGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGaattaatt                                        <  2:227379/149‑1 (MQ=255)
                                                                                                         atgTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTCGCCCGTTTTATGaatt                                            >  1:394420/3‑144 (MQ=255)
                                                                                                         aGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGAAGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAAGAAGCGCTCATGTCTTAATGTGAGCGGTAGCACGTTTTACGaatt                                            >  1:449559/1‑144 (MQ=255)
                                                                                                          ggTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTTCGTAATGCCGGGGAGCCAAAAAAAAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGactta                                           >  1:859460/1‑144 (MQ=255)
                                                                                                           gTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGCATTAATTGTa                                     >  2:259834/1‑149 (MQ=255)
                                                                                                           gTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGtc                                     >  2:259676/1‑148 (MQ=255)
                                                                                                            tCTGGAAAGAGGGATTGCCGCAAACTCCAATGCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGAATGGCGTAATGCCGTTTACCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTat                                    <  2:756625/149‑1 (MQ=255)
                                                                                                                cAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGGTTTACGAATTAATTGTa                                     >  1:743019/1‑144 (MQ=255)
                                                                                                                       ggtgtgctgcAAACTGCAATCCCTCTCTATGCTGGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAACAATAAGCGCTGATTTCTTTTGTTTATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCcat                         <  2:502095/145‑1 (MQ=255)
                                                                                                                       ggATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCcat                         >  2:609306/1‑149 (MQ=255)
                                                                                                                         atggctgcAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCcatct                       <  2:852314/146‑1 (MQ=255)
                                                                                                                           tgccgcAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCca                          <  1:843420/144‑1 (MQ=255)
                                                                                                                               gcAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATAAATTGTATGATGAATCcatccc                      >  1:178875/1‑142 (MQ=255)
                                                                                                                                      gCAATCCCTCTTTATTCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTggg               <  1:461605/144‑1 (MQ=255)
                                                                                                                                      gCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGtt          >  2:714136/1‑149 (MQ=255)
                                                                                                                                         agcccTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCAGCTGGGgtg            <  1:363635/142‑1 (MQ=255)
                                                                                                                                         accccTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGgtg            <  1:544577/142‑1 (MQ=255)
                                                                                                                                          tCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGgtgt           >  1:869789/1‑144 (MQ=255)
                                                                                                                                           cccTCTCTATGCTTGATGTATGCCTGAGGTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTCGCACGTTATAAGAATTAATTGTATGATGAATCCATCTCATCTGGGCGGTTGATTa     >  2:763334/1‑149 (MQ=255)
                                                                                                                                             ctctctATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGTTCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGa        <  1:805484/144‑1 (MQ=255)
                                                                                                                                             ctctctATGCTTGATGTATGCCTCAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATg   >  2:544144/1‑149 (MQ=255)
                                                                                                                                              tctctATGCTTGATGTATGCCTGAGTTCGCCGCGCATCGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGCTTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGa  <  2:301016/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
GCACCAGAGAGTCAAGCACTCCCTCCATCGGTGCCAGTAACACACGCATATCATCACCCGCAAAAAAATGAGGCGCTATGTTAGCGCCTATGGTCAGCGGATTAAAGGTCTGCAAAGAGGGATTGCTGCAAACTGCAATCCCTCTCTATGCTTGATGTATGCCTGAGTTCGCTGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGA  >  CP009273/2223816‑2224106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.