| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 776825 = | 69 (1.010) | 10 (0.150) +G |
6/292 | 6.7 | 14.8% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | CP009273 | = 2514488 | 47 (0.690) | noncoding (216/1345 nt) | IS186 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAG > CP009273/2514344‑2514633 | acAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACGCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTtctc < 2:480626/149‑1 (MQ=255) cAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCCCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTtc < 1:838143/146‑1 (MQ=255) cAATCTCTTTAGAAAATGCGTTGACTCATTTTGGACTCCCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTtc < 1:881465/146‑1 (MQ=255) aaTGTCTTTAGAAAATGCGGCGCCTCATTTTGAACTCCCCCTGTATTGCGCCTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGc < 2:656509/149‑1 (MQ=21) tAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTaac > 2:970692/1‑148 (MQ=255) aaTGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCt < 2:628082/149‑1 (MQ=255) gCGTTGACTCATTTTGAACTCTCCCTAGAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACACGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCt < 1:151014/146‑1 (MQ=255) gtGACTCAGTTTGACCTCTCCCTAGAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTaaa < 2:743504/148‑1 (MQ=255) aCTCATTTTGAACCCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAAt < 2:1009685/149‑1 (MQ=255) tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATGTCTTGTAAAAAtgt > 2:47117/1‑149 (MQ=255) cATTTTGAACTCTCCCTATAACGCGACTCCACACAGCGGCGGCGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGCTCGGTGTGTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAAtgtg < 2:668992/149‑1 (MQ=25) aTTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGa > 2:990450/1‑149 (MQ=255) aTTTTGAACCCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGa < 2:489561/149‑1 (MQ=255) ttttGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGaa > 2:676747/1‑149 (MQ=255) tgaaagcgcccAATAATGCGACTCCCCACAGCGGGGGTGAGTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGAGGTTCGATCCCGTCATCACCCTCCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTa < 2:275304/141‑1 (MQ=21) aCTCTCCCTATAATGCGACCCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCg < 2:849628/149‑1 (MQ=255) ccTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGAAAACATGTGACGTACCGacg > 1:656352/1‑144 (MQ=255) ccTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCCTGGCCTTCTCGATTTCTGTTAAACATGTGAATTACCGAAGTgg > 2:1009752/1‑149 (MQ=18) ccTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGGCATATCTCACCTCCTCCTCTCCAGCGAACTTTCTTGTGAGCATGTGAAGTACAGaca > 1:1010906/1‑144 (MQ=18) aTGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACTAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTGCCGAAGTGGGTGAtt < 2:542310/149‑1 (MQ=255) aTGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCGAGCTAAATTTCTTGTGAAAATGTGAAGTACCGAAGTGGGTg > 1:212562/1‑146 (MQ=255) cGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCATCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGAtt < 1:675894/146‑1 (MQ=255) tCCACACAGCGGGGGTGTTTAGCTCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCt < 1:225982/146‑1 (MQ=255) cacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCGCGCCTGCGCAATGTCGGGTGAACAGGTGAAGTACCGATGGGGGGGATGAGCtgtag > 1:852829/1‑142 (MQ=14) acaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCGAGCTAAATTTCTGGTGAAAAGGTGAAGTACGGACGGGGGGGCTTAGGTCAGca > 1:521288/1‑145 (MQ=18) aGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGgag < 2:936328/149‑1 (MQ=255) aTTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTccc > 2:476914/1‑149 (MQ=255) ttAGCCCAGCTGTGAGAGCACCTCCCTTACAACGAGGCGGTCGGCCGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATGTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCt < 2:378023/149‑1 (MQ=37) cTGGGAGAGCTCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAaggag < 2:765445/149‑1 (MQ=255) gggAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGGGATTAGCTCAGCTGGGAGAGCACCTCCCTAACAAGGAggg > 2:866546/1‑149 (MQ=255) aCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCTCTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTcggcg < 2:415392/149‑1 (MQ=255) aCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTCAATTTCTTGTAAAAATGTGAAGTACCGAAGTGTGTGATTAGCTCAGCTGGGAGAGCGCCTCCCTTACAAGGAGGGGGTcg > 1:294136/1‑146 (MQ=255) ccTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCTGCGAAATGTCGGTTGAGAATGTGAAGTACCGAAGTGGGTGCTTAGCTCAGCTGGGAGAGCACCCCCCTTACCTAGAggggagcgc > 1:395856/1‑141 (MQ=21) cTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTTCTAAGCTCTGATGGGAGAGCACCCCCCTTACAAGGAGGGGGTCGGCGGt > 2:216098/1‑149 (MQ=37) cTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGt > 2:216214/1‑149 (MQ=255) tCCCTTTCCAGGAGTGTGCGGGCAGTTCGATCCCTCCATCACCCACCACTTTATCGACAGGTAAATTTCTCGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTcggcg < 1:386750/146‑1 (MQ=21) tCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTGAAAATGTGACGTACCGAAGTGTGTGATTAGCTGAGCTGGGGGCGCCCCTCCCTTACAAGGAAGTGTGCGGCGGtg > 2:152759/1‑148 (MQ=25) ttACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATGTCTGGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGCGCACCCCCCCTACAAGGAAGGGGTCCGCGGttg > 1:846446/1‑145 (MQ=37) gtaccatgaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTc < 1:1055101/139‑1 (MQ=255) aaGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATGTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGAGTAGCTCAGCTGGGAGAGCACCTCCCGTAGAAGGAGGGGGTCGGCGGTTCGCTCCCg > 2:70243/1‑149 (MQ=38) aTCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCg > 1:413335/1‑146 (MQ=255) aTCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGCTGGCGGTCCGCTCCCGCCCTcacccaccccctca > 1:105047/1‑140 (MQ=25) ccGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTggggc > 1:833216/1‑145 (MQ=255) ccGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGt > 2:1057553/1‑149 (MQ=255) cGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTCGCTCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCACCCACGACTTCGGGTCGtt > 2:73190/1‑149 (MQ=255) tttCTAGCCAGCGAAATTTCTGGTAAAAATGTGAAGTACCGACGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCACTTCGGGTCGTTAGCGCAGTTGGTa > 1:638933/1‑146 (MQ=18) ttCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTag > 1:315633/1‑146 (MQ=255) | ACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAATTTCTTGTAAAAATGTGAAGTACCGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAG > CP009273/2514344‑2514633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |