New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	37 (1.920)	30/276	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTT  >  CP009273/360143‑360434                                                                                                                                                |                                                                                                                                                     cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaa                                                                                                                                                 <  2:284458/149‑1 (MQ=38)       gccattGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaattaatt                                                                                                                                           <  1:84389/145‑1 (MQ=255)                   cAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaa                                                                                                                               <  2:215069/149‑1 (MQ=255)                            aaTCCGCTCCCGGCGGATTTTTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCg                                                                                                                      <  1:109696/149‑1 (MQ=255)                            aaTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTTGACTGAGTCTTTAGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCg                                                                                                                      <  1:119132/149‑1 (MQ=255)                                                   ctactaAGGAGAGCGTTCACCGACAAACAACAGATAAAACGCAAGGCCCAGTCTTGCGACTGAGCCTTTGGTTTTATTTGATACCTGGGGAATGGTGAATTCATACTTAAAAACGAAAGGGCCTAGTGAAACACCAATTATTAGAGGtt                                                                                               >  2:92138/1‑149 (MQ=17)                                                      cTCAGGAGAGCGTTCCCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                                            <  1:214449/149‑1 (MQ=255)                                                      cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGGAAGGGCCTCGTGAAACGGCTATTTTTACAGGtgtat                                                                                            >  2:46990/1‑145 (MQ=21)                                                         aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTc                                                                                         <  2:266979/149‑1 (MQ=255)                                                           gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCAt                                                                                       >  1:56204/1‑149 (MQ=255)                                                           gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTGCGTTTTATTTTATGCCTGGGGAATTGGGTATTAATTCTTGTAGACGGAAGGGCCTCGTGATCCGCCTATTTTTGGAGGCTAAGGTCAt                                                                                       >  2:262940/1‑149 (MQ=18)                                                            agcgCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATg                                                                                      <  2:314918/146‑1 (MQ=255)                                                                cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGTGCCTCGTGATACGCCTATTTTGATAGGTTAATgaagtggatg                                                                                  >  2:63689/1‑140 (MQ=25)                                                                     aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCCGTTTTTATAGGTTAATGTCATGGGAAGATcc                                                                             >  2:4627/1‑149 (MQ=255)                                                                       cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTATCGTTTAATTTGAAGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGGTCCAg                                                                           >  1:126538/1‑149 (MQ=255)                                                                         acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGcc                                                                         <  1:253929/149‑1 (MQ=255)                                                                           aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGCGCCTTTCGATATAAATGATGCCACGGGAATTAGGAATTAATTATTCTCGGCCTGTTAGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGGAGATGCAGCGGa                                                                       >  1:73652/1‑149 (MQ=16)                                                                              caacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCTTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCa                                                                    <  1:92138/149‑1 (MQ=255)                                                                               aacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGACTGGGGCAATAGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTTTAGTTTAATGTCATGGGAGGATCCAGCCGACCAg                                                                   >  1:277371/1‑149 (MQ=37)                                                                                        aaCGACAGCGCCTGTCTTTAGACTGGGCCTTTCGTTTTAATTGCTGAAAGCATCAAACTGAAGTAATTCTTGAAGACGACAGGGCTTTGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCAc                                                          <  1:87497/149‑1 (MQ=255)                                                                                              agccccAGTCTTTCGTCTGATCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGACCCAGCCGACCAGGCTTTCCACGCTcgc                                                    <  1:65443/146‑1 (MQ=39)                                                                                                gCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTTAAAAAGAAAGAGCCTGGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGt                                                  >  1:147395/1‑149 (MQ=38)                                                                                                  ccATTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATTGCTGCTCCTCCTAGCAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGc                                                >  2:322262/1‑149 (MQ=37)                                                                                                  ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTAGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGc                                                >  1:229205/1‑149 (MQ=255)                                                                                                        tttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTcc                                          <  2:240639/149‑1 (MQ=255)                                                                                                         ttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGCAGACCCCCCCGACCAGCCTTTCCAAGCCCGCGTGCCGCTctg                                         <  2:335512/149‑3 (MQ=255)                                                                                                             aCTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATGGTTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTc                                     <  1:315696/149‑1 (MQ=255)                                                                                                              cTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCg                                    <  1:288041/149‑1 (MQ=255)                                                                                                                   ccTTTTGTTTTATTTGATGCCTGGGGAATTGAGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATATGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgc                               <  1:8009/149‑1 (MQ=255)                                                                                                                    cTTTCGTTTTAATTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGGCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                              <  2:185998/149‑1 (MQ=255)                                                                                                                          ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTAATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                        >  1:320190/1‑149 (MQ=255)                                                                                                                                        tGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTg          >  1:240697/1‑149 (MQ=255)                                                                                                                                                tgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATCCGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGttt  >  1:334852/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTT  >  CP009273/360143‑360434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.