New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2269338 =	9 (0.470)	9 (0.470)	8/276	NT	50.0%	coding (587/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

GCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAAC  >  CP009273/3577417‑3577700                                                                                                                                           |                                                                                                                                                  gCATAACCTGAATCCGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGTGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaaa                                                                                                                                         <  1:271693/149‑1 (MQ=25)        cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGAAACtt                                                                                                                                  >  2:65582/1‑149 (MQ=38)              cTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGGACATAAAACACTATCAATAAGTTGGAGGCATTACCGACATTAGAAGTAACTTTTTTGa                                                                                                                            >  1:108722/1‑149 (MQ=255)                       caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAgaga                                                                                                                   >  2:173695/1‑149 (MQ=255)                                          ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACAATATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAGCTTTTTTGAAATTAGAGATAATATTGGAACAGAAAat                                                                                                >  2:89380/1‑149 (MQ=255)                                           gAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCAGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata                                                                                               >  1:260069/1‑149 (MQ=255)                                               tCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATAtt                                                                                           <  1:190174/149‑1 (MQ=255)                                                        ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGATGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGATCgat                                                                                  >  2:185171/1‑147 (MQ=255)                                                         tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGttt                                                                                 <  2:255895/149‑1 (MQ=255)                                                                   gggtgAGCTGCATGACAAAGTCATCGGTCATTATTTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtct                                                                       <  2:231301/145‑1 (MQ=255)                                                                           tGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTc                                                               <  2:89704/149‑1 (MQ=255)                                                                           tGCATGAAAAAGTCATCGGGCATTATCTGAACATAAAACACGATCTATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTc                                                               <  2:5023/149‑1 (MQ=255)                                                                                 aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAc                                                         >  1:166851/1‑149 (MQ=255)                                                                                 aCAAAGTCATCGGGCATTATCTGAAAATAAAACACTATCAATAAGTTGCAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACCGAAAACATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAc                                                         <  2:198524/149‑1 (MQ=255)                                                                                   aaaGTCATCGGGCATTATCTGAACATAAAACACAATCAATAAGTTGGGGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGa                                                       >  1:209918/1‑149 (MQ=255)                                                                                    aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGaa                                                      >  1:169283/1‑149 (MQ=255)                                                                                            gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGa                                              <  1:173695/149‑1 (MQ=255)                                                                                                 ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAgtt                                         >  1:182650/1‑149 (MQ=255)                                                                                                        aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTTTTTTTTTTTATAATATTAGAACAGAAAATATATTCAGTTCATTTAGTGGTTTCTCTTCATTCTTAAACGAAATCATGGACAATTGTTCata                                  >  2:68502/1‑149 (MQ=37)                                                                                                        aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCata                                  >  1:77181/1‑149 (MQ=255)                                                                                                                        aaTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGGGATAATATTGGCACAGAAAATATATTCAGTCCGTTTAGTGATTTCTCTTCATTCTTAAACGAAACCATGGACAGTTGTTCATAATAATCAAAAGGAAAc                  <  2:96789/149‑1 (MQ=255)                                                                                                                         aTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATACTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGTAACa                 >  2:285706/1‑149 (MQ=255)                                                                                                                             gTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACaaaaa             >  1:182348/1‑149 (MQ=255)                                                                                                                             gTTGGAGGCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACaaaaa             <  2:126188/149‑1 (MQ=255)                                                                                                                                ggAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGTAAACAAAAATCa          >  2:195828/1‑149 (MQ=255)                                                                                                                                    tCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGt      >  2:310815/1‑149 (MQ=255)                                                                                                                                    tCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGt      >  1:3351/1‑149 (MQ=255)                                                                                                                                       ttACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTaaa   <  2:166851/149‑1 (MQ=255)                                                                                                                                       ttACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAAAATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATAGACAGTTGTTAATAATAATCAAAAAGAAACAAAAATCATAGTaaa   >  1:64837/1‑149 (MQ=255)                                                                                                                                        tACCGACATTAAAAGTAACTTTCTTGAAATTAGAGATAATATTGGCACAGAAACTATATTGAATTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAAc  <  1:73700/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                  GCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAAC  >  CP009273/3577417‑3577700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.