| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 2,420,338:1 | +AATT | 71.1% | intergenic (‑71/+150) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420334 | 7 (0.370) | 17 (0.910) +AATT |
16/260 | NT | 71.1% | intergenic (‑67/+154) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420335 = | 7 (0.360) | intergenic (‑68/+153) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||
CGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTT > CP009273/2420193‑2420475 | cGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGAc < 2:271188/149‑1 (MQ=255) caaacgccgcagttgcgctggagcaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAg > 1:106457‑M2/136‑149 (MQ=255) cgccccATTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGCTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGATTATTTTCATGTTTGTTATTTTTATCGTGCCATAAAAGTGACCATCAAGGCAAAata < 1:11445/149‑1 (MQ=255) aggtgctctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATc < 2:293143‑M2/24‑1 (MQ=255) ttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCCTCTAGgcaaaatccccc > 2:202456‑M2/124‑144 (MQ=255) ttgcgctggagaaggccagaaccagagagagcgatagcaccagtgttttcataatgtcctcaactgacagtcttcttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAATATAtcca > 2:324313‑M2/124‑148 (MQ=255) gCCAGAACCAGAGGGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGCCACATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGtatta > 1:224494/1‑149 (MQ=255) accagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGCTAGACGTattatt > 2:313390‑M2/104‑149 (MQ=255) agggagagggagagcaccagttttttcatagttttctccactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTATACGTATTAttttt < 2:145550‑M2/49‑1 (MQ=255) cgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTaaaa < 1:242759‑M2/57‑1 (MQ=255) agCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAAGCAAAATATCCCGCCCCGTTAGACGGTTTATTTTTGATTcaaaaa > 2:79184/1‑148 (MQ=255) accagtttttttataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTCTTTTTCATTAAAAATGCTTa > 2:138416‑M2/86‑149 (MQ=255) ttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGc > 2:260722‑M2/79‑149 (MQ=255) tttaataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCACGGCCAAATATCCTGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCa < 2:50120‑M2/72‑1 (MQ=255) aatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTACTTATGCGATTCaa > 2:27677‑M2/72‑149 (MQ=255) tcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgtctgctagtgAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGcacca < 1:332023‑M2/85‑1 (MQ=255) ctgacagtctttttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGAt > 1:204984‑M2/61‑149 (MQ=255) ttatagggaatatttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGACAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCAACACGATAGTGCAACAAAc > 2:95701‑M2/49‑149 (MQ=255) ttttATAGTGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCt < 1:301179/149‑1 (MQ=255) ttttATAGGGAATATTTACTGGTTTGTTACACTTATCGTGCCATAAAATTGTCCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCt < 1:275528/149‑1 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCTCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCa > 2:96591/1‑149 (MQ=255) tttacaggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCAcc < 2:106457‑M2/113‑1 (MQ=255) ggtttgttacacttatcgtaacataaaattAATTGACCATCAAGGCCAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATTCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgatg < 1:97615‑M2/119‑1 (MQ=255) acacttatcgtaacataaaattAATTGACCATCAAGGCAATAGACCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTcc < 1:313390‑M2/127‑1 (MQ=255) taacataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGCTGATCATTCCATCAGGTACa > 2:89592‑M2/13‑149 (MQ=255) ataaaattAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCtt > 1:213161‑M2/9‑149 (MQ=255) | CGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTT > CP009273/2420193‑2420475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |