| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 378045 | NA (NA) | 10 (0.700) | 10/272 | NT | 66.8% | intergenic (+10/+2) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | = 559700 | 5 (0.350) | coding (237/633 nt) | sfmZ | response regulator family protein | |||||
CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTT > CP009273/377906‑378183 | ccTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTAt > 1:101949/1‑150 (MQ=35)ccTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGAAGACTGGAAGTATAGGGGCAAATCCAATTACCTag > 1:101919/1‑149 (MQ=255) cAGAGGCGCTCGAGAATTATAACGAGTGGCATCCGCATAGTGCTCTTGGTTATCGCTCGCCACTGGAATATCTGCGGCAGCGTGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAAGTACCTATc > 2:195937/1‑146 (MQ=11) gggCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAgg < 2:44651/145‑1 (MQ=38) gCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTCCGTGATTTTTGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAAt > 1:127023/1‑150 (MQ=17) aCGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGTGTAAGTGGTACCAGGTTTTTGGAGATATTGTTTCATAGCCAATTACCTATCAGGCAGTTTGCGCCAAGCACt > 2:105904/1‑146 (MQ=17) tCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCCTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAAATACCTATCAGGCAGTTTGCGCCAATCACTACCAGAcccg > 2:177324/1‑145 (MQ=255) gTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACg > 2:134783/1‑146 (MQ=255) ggTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATg < 2:172849/146‑1 (MQ=255) gcCACGGGAGTATCTGCGGCAGCGGGCTTGTCATGGGTTAAGTGGTAACAGATGTCTGGATATATAGGGGCAAATCCAATTACCTAGCAGGCAGTTGGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACGAATACggg < 2:163090/146‑1 (MQ=25) atCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATaa > 1:64686/1‑150 (MQ=255) cGGCAGCGGGCTTGTAAGGGGTTAAGTGGTAACAGATGTCTGGAAATATAGGGGCAAATCGAATTACCTATCAGGCAGTTGGCGCCAATCACTACCGGACCCTGAAGAACGGCACCATGACAAATACGGGTATTCGCGCCGATaac < 2:52196/146‑1 (MQ=37) aTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAAGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAAAAACTTCAGCTGCAGtt > 2:150260/1‑146 (MQ=255) tGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGGTAACAACTTCACCTGCAGTTCGATCAATAATTAc > 1:222049/1‑150 (MQ=255) gaaCAGATGTCTGGAAATATAGGCGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAACCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTg < 1:152296/149‑1 (MQ=255) aaCAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACCTCACCTGCAGAGTCATCAATAAttcc > 2:170870/1‑144 (MQ=255) gacggcTGGAAGTATGGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAACCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTgg < 2:9592/141‑1 (MQ=255) aaaTATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAAAACGGGAATTCGCGCCGATAACAACTTCGCCTGCAGTTTCCTCAATCATTAACtagcaggcaagc > 2:13726/1‑135 (MQ=255) ataGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGACACCCTGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTTCAGTTTCATCAATACTTACCTGGTCTCCCATCTgca > 2:38021/1‑144 (MQ=255) aGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCCGAATAtttt > 1:33950/1‑150 (MQ=255) | CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTT > CP009273/377906‑378183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |