New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	2 (0.140)	7 (0.550)	5/242	NT	64.3%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	6 (0.470)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGG  >  CP009273/1203114‑1203398                                                                                                                                                    |                                                                                                                                          cagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg                                                                                                                                         <  1:54577‑M1/18‑1 (MQ=255)                                     aGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                         <  2:124219/146‑1 (MQ=255)                                         actgacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc                                                                                                 <  1:244450‑M1/150‑43 (MQ=255)                                                      cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaca                                                                                    <  1:41066‑M1/150‑56 (MQ=255)                                                        cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGACAACCTTGGTTTGGGAGAAGGctcggcactacctgttggtgtcccggttccgtggccttcagccactccgccaa                                                                                      >  2:152312‑M1/1‑93 (MQ=255)                                                               gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg                                                                           <  1:112852‑M1/80‑1 (MQ=255)                                                                  tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatatcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt                                                                        <  1:169732‑M1/83‑1 (MQ=255)                                                                   gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGAGCCGGTTTCATAGCTATACCGGTCATGGTtg                                                                       <  1:199659‑M1/84‑1 (MQ=255)                                                                                                  aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGctctgcattacccgtcggcgtcccggttccgtggccttcagccactccgccaacacgctggctgaaatgcaatggtgccgctttttctgctgaag                                            >  2:151512‑M1/1‑51 (MQ=255)                                                                                                  aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctctgcactacatgttggagtctcggttccgtggccttcagccactccgccaacaggctgggccaaatgcgatggtgccggtttttctgctgagg                                            >  2:151542‑M1/1‑51 (MQ=255)                                                                                                   tCGGGTGGCACTCGGTGAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACCCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGATTTGTGTTATTGAGCAATCAGTAATCATTCa                                           <  2:73040/146‑1 (MQ=255)                                                                                                     ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatcccc                                     >  1:119698‑M1/1‑48 (MQ=255)                                                                                                     ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccc                                     >  1:225054‑M1/1‑48 (MQ=255)                                                                                                          cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg                                    <  2:6050‑M1/119‑1 (MQ=255)                                                                                                            tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg                                  >  2:48312‑M1/26‑146 (MQ=255)                                                                                                                    cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAATGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTGAGTGGGGGTGGAATGccgccaa                      <  1:5408‑M1/133‑4 (MQ=255)                                                                                                                                        gTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgc  >  1:92350‑M1/1‑13 (MQ=255)                                                                                                                                                    |                                                                                                                                          CATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGG  >  CP009273/1203114‑1203398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.