| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 376716 = | NA (NA) | 6 (0.420) | 5/274 | NT | 60.0% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 559695 = | 4 (0.280) | coding (242/633 nt) | sfmZ | response regulator family protein | |||||
TTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTCTATATCCATAATGATTAAATCAACAGGACGGGTTCGGAGATAATCGATGGTTATGCGATAATCATCCGTTTTCAG > CP009273/559546‑559840 | ccatcttgtactgtgttgtacgccgattgagtttctccggccctaagacaccaatcatctgttctccaatgactagtataaaaactagtattaagactatcacttatttaagtgatattggttgtctggtgtttcagggggccagtctaa < 1:191359‑M2/1‑1 (MQ=255) gCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATa < 2:19169/146‑1 (MQ=255) aaaaCGTGTATCCGGAGAGGAGCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACtg < 1:55605/150‑1 (MQ=255) tgctccggccctaagacaccaatcatctgttctccaaggactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAACACTTTCACTGTGCTCTGGATTTGTTTGATc < 1:201177‑M2/33‑1 (MQ=255) cggccctaagacatcagtcatctgttctccaatgactagtctaataactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAACACTTTCGCTGTGCTCTGGATTTGTTTGATcc < 2:198636‑M2/34‑1 (MQ=255) cATGAAAAATATCAGTCTGATCATTGCATTTACTGATAAAACAGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGCTGATAAAAATAACACTTTCACTGTGATCTGGATTTGTTTGATCCTTTTCAGGAAgg < 1:185849/150‑1 (MQ=255) cATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatcagttatcacttaacccattac < 2:2972‑M2/146‑49 (MQ=255) gCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTc > 1:211822/1‑150 (MQ=255) ctagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTGTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTCta < 1:154852‑M2/73‑1 (MQ=255) ctagtctaaaaactagtatgaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTCAAACCGTCTGTTCCGGGCAAGTCta < 1:195654‑M2/73‑1 (MQ=255) attaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTCTATATCCATAATGAt > 2:183828‑M2/61‑146 (MQ=255) aCCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagaacatcccgtggcgagcgataaccc < 1:190392‑M2/150‑90 (MQ=255) gCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcaggcgataacccagcgcacta < 2:178349‑M2/146‑99 (MQ=255) aagtgatattggttgtctggagattcagggggccagtctaAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTCTATATCCATAATGATTAAATCAACAGGACGGGTTc < 2:94838‑M2/106‑1 (MQ=255) tGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatg < 1:226365‑M2/150‑107 (MQ=255) gCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTCTATATCCTTAATGATTAAATCAACAGGACGGGCTCGGGGATa > 2:4649/1‑146 (MQ=255) ttccgatccctgatttcgaTGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtt > 1:112684‑M2/10‑35 (MQ=255) aaaGCATTCTGATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta > 1:78460‑M2/1‑34 (MQ=255) tCTTATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataa > 2:23597‑M2/1‑27 (MQ=255) cTGATTTCGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttagatc < 2:98333‑M2/146‑121 (MQ=255) cGATGATAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcc > 1:222445‑M2/1‑19 (MQ=255) atgatAAAAATAACACTggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccgcaattactatgcggatgccattcgttataatgctcgaacg > 2:106761‑M2/1‑17 (MQ=255) aaCACTTTCAGTGTGCTCTGGATTTGATTGAGCCTTTTCAGGAAGGGAAAACCGTCTGGGCGAGGAAGGTCTATATCCATAATGATTAAATAAACAGGACGGGTTCGGAGATAATCGATGGGTATGCGATAATCATCCGTTTTCAg > 2:206371/1‑146 (MQ=255) | TTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTGCTCTGGATTTGTTTGATCCTTTTCAGGAAGGTAAAACCGTCTGTTCCGGGCAAGTCTATATCCATAATGATTAAATCAACAGGACGGGTTCGGAGATAATCGATGGTTATGCGATAATCATCCGTTTTCAG > CP009273/559546‑559840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |