New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 221768	NA (NA)	13 (0.160)	9/280	10.4	NA	noncoding (1511/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	CP009273	= 221780	NA (NA)					noncoding (1523/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

AGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA  >  CP009273/221691‑221881                                                                              |                                                                                                                  aggaggtagCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTAAAGTGATGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTc                                            <  1:422092/146‑1 (MQ=1)                             ctgaCCACTTGGTGGTTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACTCAGATTGTCTGATGAAAATGAGCAGTAAAAc                      <  2:479508/140‑1 (MQ=0)                                          gaatCATGACGGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCCGTTGGATCACCTCCTTACCTTAAAGAAGCGGACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTc   <  1:205867/146‑1 (MQ=0)                                                 gctcggcgTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCa  <  2:963782/136‑1 (MQ=1)                                                 ccgatctgTGAAGTCGTAACAAGGTAACCGTAGGCGTACCTGCGTGTGGATCACCTCCTTACCTTAAAGAACCGTACTGTTCTGTGCGCACACAGATTGTCGTATGAAATTGAGCAGTAAATCCGCTACAAGCCTTTAgagga  <  2:587886/136‑5 (MQ=0)                                                                              |                                                                                                                  AGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA  >  CP009273/221691‑221881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.