Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,774,5120AG23.3% 194.4 / 13.9 105intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (67/12);  new base G (5/19);  total (73/32)
Fisher's exact test for biased strand distribution p-value = 1.16e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 108 total aligned reads displayed.

GGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCT  >  CP009273/3774364‑3774660
                                                                                                                                                       |                                                                                                                                                     
ggAACGCGGCATAGGCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCCCTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGa                                                                                                                                                       <  1:231622/149‑1 (MQ=255)
 ggaTGCGTCAAAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑TTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                                                                                      <  2:1005824/147‑1 (MQ=255)
 gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                                                                                      <  2:52185/149‑1 (MQ=255)
 gAATCCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCCCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAg                                                                                                                                                      <  2:13818/149‑1 (MQ=255)
  aaggCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAgg                                                                                                                                                     <  1:1102220/146‑1 (MQ=255)
  aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACACCCCACCCAC‑GAGAGGGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAgg                                                                                                                                                     <  2:150430/149‑1 (MQ=255)
  aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAgg                                                                                                                                                     <  2:1101870/149‑1 (MQ=255)
  aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACGCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAgg                                                                                                                                                     <  2:1220717/149‑1 (MQ=255)
   aTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                                                                                    >  1:1663634/1‑149 (MQ=255)
       ggCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGa‑aa                                                                                                                                               >  2:560777/1‑149 (MQ=255)
        gCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGa‑aaa                                                                                                                                              <  2:1052253/149‑1 (MQ=255)
          aTAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAgg                                                                                                                                            <  2:152135/149‑1 (MQ=255)
          aTAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAgg                                                                                                                                            >  2:1598230/1‑149 (MQ=255)
            aGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGcc                                                                                                                                          >  2:1934518/1‑149 (MQ=255)
              tCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGCGAGGGCC‑GGGGGGGGGGGA‑AAGGGCCga                                                                                                                                        >  2:1476997/1‑148 (MQ=255)
                      gcCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCCCTGCTCa                                                                                                                                >  2:663130/1‑149 (MQ=255)
                           cTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAAt                                                                                                                           >  1:971640/1‑149 (MQ=255)
                            tCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGCACCGTTCGGCGCTGTATGTACTCCCTCACTCGGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGATAGGGCC‑GGGGTGAGGGCA‑AAAGCCCGCCCTGCTCACCaaat                                                                                                                          >  1:982237/1‑147 (MQ=255)
                                  tAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGc                                                                                                                    >  2:815913/1‑149 (MQ=255)
                                   aaC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                                                                   >  2:1289814/1‑149 (MQ=255)
                                    cc‑ccTCTCCCTGAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTACGGTGAGAGGGCC‑CGGGTTAGGGGG‑AAAGGCCGCCCTGCTCCCCCATTTTCTGCtc                                                                                                                  >  1:632868/2‑148 (MQ=255)
                                     c‑ccTCTCCCTGAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGGGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTTTGCTAt                                                                                                                 >  1:754140/1‑149 (MQ=255)
                                     c‑ccTCTCCCTGAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTAC‑ATAACACCGCCGTGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                                                                                 >  2:455826/1‑149 (MQ=255)
                                       ccTCTCCCTGAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                                                                                >  1:1424255/1‑149 (MQ=255)
                                       ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGGGGGCC‑GGGGCGAGGGGA‑AAAGGCCGCACTGCCCACCAATTTTCTGCTATc                                                                                                                >  2:1337858/1‑149 (MQ=255)
                                       ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGG‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                                                                                >  1:785803/1‑149 (MQ=255)
                                         tctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                                                                              >  1:1631614/1‑149 (MQ=255)
                                          ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                                                                             >  1:490822/1‑149 (MQ=255)
                                           tcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCT‑GGGGTGGGGGGT‑AGGGGCCGCGCTGCTCACCAATTTTCTGCTATCCTgg                                                                                                            >  2:274043/1‑148 (MQ=255)
                                             ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                                                                          >  1:1770227/1‑149 (MQ=255)
                                              cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                                                                         >  2:1457873/1‑149 (MQ=255)
                                              cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                                                                         >  1:515956/1‑149 (MQ=255)
                                              cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTAGCCTGcccc                                                                                                         >  1:1643952/1‑149 (MQ=255)
                                                   ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                                                                    >  1:1608896/1‑149 (MQ=255)
                                                    gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGTGGGGA‑CAAGGCCGCCCTGCTAACCAATTTTCTGCTATCCTGCCCCCGCAcc                                                                                                   >  2:723032/1‑148 (MQ=255)
                                                         gggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCCAACCTGCCCCCGCACTACggg                                                                                              >  1:1215611/1‑149 (MQ=255)
                                                              cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGAC‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCCATTTTCTGCTATCCTGCCCCCCCACCGACGGGGcgg                                                                                         >  1:39632/1‑147 (MQ=255)
                                                                  cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGAGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                                                                                     >  2:952915/1‑149 (MQ=255)
                                                                    gcgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                                                                   >  2:351796/1‑149 (MQ=255)
                                                                    gcgcTGTATGTACTCCCTCACTCTGAAACGACACAGAACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCt                                                                                   >  1:1732942/1‑149 (MQ=255)
                                                                      gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTTTT‑TTTTTCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCCCTGAGGGGGCAGTCCGCTaa                                                                                 >  1:24328/1‑149 (MQ=255)
                                                                         gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGC‑AAAGGCCGCACTGCTCACCAATTCTCTGCTATCCTGCCCCCGCACTAAGGGGGCCGTATGCTAAACa                                                                              >  2:126892/1‑149 (MQ=255)
                                                                          tctgtctcccctccctCTAAAACCACCCCGATCGGTTTGTCTCTCC‑CTCGCCCCGCGGGGGGAGGGGCG‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                                                                             <  2:1314560/141‑1 (MQ=255)
                                                                           tggtaCTCCCTCGCTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGGGAGGGCC‑GGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATc                                                                            <  1:470803/147‑1 (MQ=255)
                                                                             gtaCTCCCTCACTCTGAAACGACACCGCGCTGTTGGGGTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGGATGCTGAACCTCGt                                                                          >  1:1269888/1‑149 (MQ=255)
                                                                              taCTCCCTCACTCTGAAACGACACCTCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCgga                                                                         >  2:201169/1‑147 (MQ=255)
                                                                                  cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt                                                                     >  2:1489545/1‑149 (MQ=255)
                                                                                   ccTCACTCTGAAACTCCCCCGCCCTTTTTTTTCTTCC‑CTCCCCCCGCCGGGGAGGGGCCC‑GGGGGGGGGGAA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                    <  1:1078913/149‑1 (MQ=255)
                                                                                   ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                    >  2:1459118/1‑149 (MQ=255)
                                                                                    ctccccctGAACCGCCCCCCCTCTCTTTTTTTCCCC‑CCCCCCCGCCGGGGGAGGGGGCG‑GGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                                                                   <  1:513562/143‑1 (MQ=255)
                                                                                     tCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                                                                  >  1:121354/1‑149 (MQ=255)
                                                                                       aCTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa                                                                >  1:755384/1‑149 (MQ=255)
                                                                                         tctGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc                                                              >  2:1827958/1‑149 (MQ=255)
                                                                                         tctGAAACGACACCGCACTCTTTGTTTCACC‑CTCTCCCCTCCGGGGAGAGGGCA‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc                                                              >  2:1068043/1‑149 (MQ=255)
                                                                                           tgacaagACAACGCACTCTGTGGGTCTGC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AGGTGCCGCACGGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGGACTTTACGAACCAg                                                            >  1:1041037/7‑149 (MQ=255)
                                                                                           tGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGTCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAGTAAGGGGGCAGTATGCTAAACATCGTACTTTCCGAAccga                                                            >  1:1795561/1‑147 (MQ=255)
                                                                                           tGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCGCCGCCCCAAGGGGGCAGTATGCTAAACATCGTACTTTACGCACCAg                                                            >  2:637372/1‑149 (MQ=255)
                                                                                           tGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAGGCTAAACATCGTACTTTACGAACCAg                                                            >  2:733818/1‑149 (MQ=255)
                                                                                            gAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCCCTGCTCCCCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAACCATCGTACTTTACGAACCAGa                                                           >  1:1377906/1‑149 (MQ=255)
                                                                                            gAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa                                                           >  2:575915/1‑149 (MQ=255)
                                                                                             aaaCGACACCGCACTCTTTTTTTCTTC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAAGGGA‑AAAGGCCGCGCTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAgca                                                          >  1:160675/1‑147 (MQ=255)
                                                                                                ggccacCTCTCTCTTTTTTCCCCC‑CCCCCCCCTCGGGGGAGGGGCCG‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAATCATCGTACTTTACGAACCAGAAAtt                                                       <  2:1158763/146‑1 (MQ=255)
                                                                                                   ccccGCACGCTTTTTTCCTCC‑CCCGCCCCCCGGGGGAGAGGGCC‑AGGCGGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg                                                    <  1:292801/147‑1 (MQ=255)
                                                                                                      cGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCa                                                 >  2:301801/1‑149 (MQ=255)
                                                                                                       gCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCaa                                                >  1:1706888/1‑149 (MQ=255)
                                                                                                        cccttttttttcCCCC‑CCCCCCCCTCGGGGGGGGGGGCG‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCaaa                                               <  2:1580726/144‑1 (MQ=255)
                                                                                                           ttttcttcctccc‑cTCGCCCCCCGCGGGGGGGGGCC‑GGGTGGTGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATAc                                            <  1:267400/138‑1 (MQ=255)
                                                                                                            tttcatccctcC‑CCCGCCCC‑CCGGGGGGCGGGCC‑CGGGGGGGGGCACAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACt                                           <  2:1522773/141‑1 (MQ=255)
                                                                                                             tttttttCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg                                          >  2:1771620/1‑149 (MQ=255)
                                                                                                             ttttttcCCCC‑CCCGCCCCCCGGGGGGGGGGGCC‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTCAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg                                          <  1:605189/149‑1 (MQ=255)
                                                                                                              ttttttCGCCGCGCGCCCCGCGGGGGGGGGGGCC‑GGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg                                          <  1:34268/149‑1 (MQ=255)
                                                                                                               ctttgcccc‑cGCGCCCCTCGGGGGAGAGGGCG‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGc                                        <  1:1710664/142‑1 (MQ=255)
                                                                                                                 tctcccc‑ccCGCCCCGCGGGGGGGGGGGCG‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCaa                                      <  2:789541/144‑1 (MQ=255)
                                                                                                                   tccgccgcccccccccGGGGGCGGGGGCG‑GGGGGGGGAGAA‑AAAGGCCGAACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAc                                     <  1:1724251/139‑1 (MQ=255)
                                                                                                                      cc‑cTCGCCCCTCCGGGGAGAGTGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatca                                 >  2:1149042/1‑149 (MQ=255)
                                                                                                                       c‑cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatcat                                >  2:433264/1‑149 (MQ=255)
                                                                                                                        cctctccccggaggggCGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatcat                                >  2:1502190/13‑149 (MQ=255)
                                                                                                                        cctctccccggaggggAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatcat                                >  1:1450223/13‑149 (MQ=255)
                                                                                                                         cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc                               >  2:1579608/1‑149 (MQ=255)
                                                                                                                         cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc                               >  1:940106/1‑149 (MQ=255)
                                                                                                                         cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGCAAGTAGATAGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc                               >  2:1898946/1‑149 (MQ=255)
                                                                                                                           cGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTACGGGGGCAGTAGGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCg                             >  2:498510/1‑149 (MQ=255)
                                                                                                                            cccccGCGGGGGAGGGGCCG‑GGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTCAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGt                            <  2:1380267/148‑1 (MQ=255)
                                                                                                                               ccTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGGCtt                         >  1:109393/1‑149 (MQ=255)
                                                                                                                                 cccGGGGAGGGGCCG‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTg                       <  2:1377698/148‑1 (MQ=255)
                                                                                                                                  ccGGGGGGCGGGGC‑GGGGTGGGGGGC‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgc                      <  1:1614653/149‑1 (MQ=255)
                                                                                                                                   gggggggggGCCC‑GGGGGGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCCTCCCGGGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgcg                     <  1:703465/148‑1 (MQ=255)
                                                                                                                                        ggggggCCGGGGGTGGGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTaa                 <  1:957283/146‑1 (MQ=255)
                                                                                                                                            ggCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTCATACCg            >  2:982133/1‑149 (MQ=255)
                                                                                                                                            ggCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCg            >  2:1270866/1‑149 (MQ=255)
                                                                                                                                            ggCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCg            >  2:749864/1‑149 (MQ=255)
                                                                                                                                            gcgc‑GGGGGGGGGAGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCg            <  2:254734/146‑1 (MQ=255)
                                                                                                                                             gCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCgg           >  2:512829/1‑149 (MQ=255)
                                                                                                                                              gtgggggAGATGCGA‑AACGGCCGCACTGCTCACCAAGTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCgg           <  2:354220/146‑1 (MQ=255)
                                                                                                                                               c‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAGATCGTCTGTCTTTGTGCTAATATCGGCt         >  2:41442/1‑149 (MQ=255)
                                                                                                                                                 gggtcaaGGGAA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCtt        <  1:1706088/143‑1 (MQ=255)
                                                                                                                                                 ggggTGAGGCGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCtt        >  1:1042591/1‑149 (MQ=255)
                                                                                                                                                  gggTGGGGGAT‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCttt       <  2:78839/149‑1 (MQ=255)
                                                                                                                                                     agAGGCGA‑AAGGGCCGCACCGCCCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGt    <  1:1078395/148‑1 (MQ=255)
                                                                                                                                                       aGGGGA‑AAAGGCCGCACAGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGGAGTATGCTAAACATCGTACTTTACGAACCAGAAATGCCGCCAAATACTGGCAACATCATGCGTCTTTGCGCTAATACCGGCTTTCGTCt  >  1:1320593/1‑149 (MQ=255)
                                                                                                                                                       |                                                                                                                                                     
GGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAC‑CCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGGA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCT  >  CP009273/3774364‑3774660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑