New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2096424	NA (NA)	11 (0.560)	9/270	NT	45.8%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	= 2427745	13 (0.660)					coding (476/660 nt)	dedA	DedA family inner membrane protein

TTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTA  >  CP009273/2096294‑2096562                                                                                                                                   |                                                                                                                                           ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAAt                                                                                                                          >  1:293724/1‑149 (MQ=40)      tGGTCTGACGGCGCCTACTCGGTAGTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATaaa                                                                                                                           <  2:316234/143‑1 (MQ=14)              cGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGACCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAGTAAAAt                                                                                                             >  1:298673/1‑149 (MQ=255)              cGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACaa                                                                                                                   >  2:127549/1‑143 (MQ=255)                   cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGaa                                                                                                        >  1:164349/1‑149 (MQ=255)                       ctgctaAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATTACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGca                                                                                                    <  1:88187/149‑1 (MQ=255)                        tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGcac                                                                                                   >  1:104831/1‑149 (MQ=255)                          ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGaaa                                                                                                       >  2:202961/1‑143 (MQ=255)                            gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGGCTTGTTCGCACCTTCCTTAATCACTAACAGAAATGCAACAATAAAATCCGAAAGCCCAggg                                                                                               >  1:155671/1‑148 (MQ=14)                             aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACCAACATGATCTCATATCACGGGCTTGTTCGCACCTTCCTTAGTCCCTAACATAAGTGACACAATAAAACCACaacgaa                                                                                                    >  2:133980/1‑139 (MQ=14)                                    tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATCAATGACACAATAAAATCAGAAAGCACAGGaaa                                                                                             <  2:320790/143‑1 (MQ=255)                                      tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACAACATAAAATCAGAAAGCACAGGAAAtt                                                                                           >  2:147741/1‑143 (MQ=255)                                                          aCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGCTTTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAt                                                                 <  1:343296/149‑1 (MQ=255)                                                                    aaCCCTGTTCTAGGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACAGAATAATCATGTAAAGATTTCGCTTCAt                                                       <  1:197404/149‑1 (MQ=255)                                                                      cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAtct                                                     >  1:119486/1‑149 (MQ=255)                                                                        cTGTTCTCTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCTACTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCg                                                   <  1:176391/149‑1 (MQ=255)                                                                        cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCg                                                   <  1:208767/149‑1 (MQ=255)                                                                                 ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCa                                          >  1:132725/1‑149 (MQ=255)                                                                                              aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTa                                   <  2:263719/143‑1 (MQ=255)                                                                                                  aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCAt                         <  1:144172/149‑1 (MQ=255)                                                                                                        tcATATCAGGGACTTCTTCGGACCTTCCTTAATCCCTACCATAAATGACACAATAAAGTCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCAt                         <  2:268301/143‑1 (MQ=255)                                                                                                         cATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATa                        >  2:90184/1‑143 (MQ=255)                                                                                                                gggACTTGTTCGCACCTTCCTTAATGCCTAGCATAAATGACACAATAAACTCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCCCATCATCTGGGAACAGGCAGAATGTACTAAAAGCATCACCCttc                 >  2:40197/1‑142 (MQ=255)                                                                                                                               cttccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATCTTCTTACGGAATAACCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTCCTTTCGACATAtttg  >  2:175578/1‑142 (MQ=255)                                                                                                                                   |                                                                                                                                           TTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTA  >  CP009273/2096294‑2096562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.