| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 3,528,829:1 | (GTTTTCAGCCAG)1→2 | 88.6% | coding (399/1353 nt) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3528810 | 3 (0.150) | 23 (1.090) +CAGCCAGGTTTT |
18/206 | NT | 88.6% | coding (418/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | CP009273 | 3528811 = | 3 (0.130) | coding (417/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||
CGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAG > CP009273/3528673‑3528950 | cggtcggtTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGGACCCAGATATTGGGCGAcagccag < 2:314532‑M1/145‑8 (MQ=255) gATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGACTTTCGGGAAGCGGCACGCGAACCCAAATATTACCCCAcagccaggttttcagccag > 1:173473‑M1/1‑126 (MQ=255) gAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCCCGCGTACCCAGAAATTGGGCGAcagccaggttttcagccaggattt > 2:70358‑M1/1‑121 (MQ=255) gAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGCTTTCAGCCAgaatat > 2:70441/1‑141 (MQ=255) aCAGCCACGCCACGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagcca < 1:253289‑M1/145‑31 (MQ=255) aGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccaga > 2:146497‑M1/1‑113 (MQ=255) aGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccaga > 2:146507‑M1/1‑113 (MQ=255) aGCCACGCCCCGCCTAGCGCCATTAGCATAATCGCCAGCGTATAGCGGAACTGCGGAGAGAAATCGCCCTGGTGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccaga < 2:344713‑M1/145‑33 (MQ=255) gcaacgcCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagac < 1:224877‑M1/142‑34 (MQ=255) ccccGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacagg < 1:379621‑M1/145‑40 (MQ=255) ccgaTCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCATCCAGACGACAGGCGAACTTTTGTTGACCt < 2:73011/142‑1 (MQ=255) tCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATATCGGTCAGCGGAACGCGTACCCAGCTATTGGGCGAcagccaggggttcagccagggcttcagccagacgacaggcgaactttt > 1:63575‑M1/1‑97 (MQ=255) tAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGCcagccagggtttcagccaggtgttcagccagacgacaggcgaacttttgttgacctcaac > 2:226911‑M1/1‑85 (MQ=255) cGCCAGCGTATAGCGGAACATCGGAGAGAAATCGTCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgc < 2:393606‑M1/145‑65 (MQ=255) accagCGGAGCGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAacgccaggttttctgccaggttttcagccagacgacaggcgcacttttgttgacctcaagccgcacttccgtcgggccgc > 1:203237‑M1/3‑65 (MQ=255) aCAGCGGAGAGAAATCGCCCGGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcc < 1:57913‑M1/145‑82 (MQ=255) aGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgccca > 1:226295‑M1/1‑62 (MQ=255) agaAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccagtttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctg < 1:389630‑M1/145‑91 (MQ=255) tgatgaATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgat > 2:47556‑M1/1‑44 (MQ=255) gtaagcgGCACGCGTACCCAGATATTGGGCGAcagccaggttgtcagccaggttttcagccagacgacaggcgaacttttgttgaccccaacgcgcactcccgtcgggccgcccagttgctgcgccatctgatggcttaagaatt < 2:177030‑M1/142‑114 (MQ=255) gTCAGCGTCACGCGGTCCCAGAAATTGGGCGAcagccaggttttcagcctgtttttcagccagacgacaggcgaactgttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaatt < 1:96935‑M1/145‑114 (MQ=255) gTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaatt < 2:354480‑M1/145‑114 (MQ=255) gTCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaatt < 2:371078‑M1/145‑114 (MQ=255) tCAGCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaattc > 2:224261‑M1/1‑31 (MQ=255) gCGGCACGCGTACCCAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaattcatg > 1:240717‑M1/1‑28 (MQ=255) cGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTGCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCaa < 2:173473/145‑1 (MQ=255) ccgggtaccCATATCTTGGGCCAcagccaggttttcagccaggttttccgccagacgacaggccaacttttgttggcctcgacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaattcatagtgtt < 1:68605‑M1/141‑123 (MQ=255) ccAGATATTGGGCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttattgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaattcatagtgttgcgcccaa > 2:282485‑M1/1‑15 (MQ=255) ccAGATATTGGGCGAcagccaggttctcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacttccgtcgggccgcccagttgctgcgccatctgatggcttaagaattcatagtgttgcgcccaa > 2:374081‑M1/1‑15 (MQ=255) ggCGAcagccaggttttcagccaggttttcagccagacgacaggcgaacttttgttgacctcaacgcgcacatccttcgggccgcccagttgctgcgccacctgatggcttaagaattcatagtgttgcgcccaacgcagacctg < 2:63575‑M1/145‑141 (MQ=255) | CGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAG > CP009273/3528673‑3528950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |