| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 20 (0.860) | 19/268 | NT | 66.7% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 10 (0.430) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
CTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTT > CP009273/2400113‑2400400 | actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaagtcggctgaaacatgaagaaatgaaatgactgagtcagcctagaagaatttgcccgattattcgaaacttccc > 2:243750‑M2/145‑145 (MQ=255) ctggagatagagccgtaaatgacgaataaacggtctaaataggcggattcgaggcatttactggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt < 1:94561‑M2/2‑1 (MQ=255) tcctatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaa < 1:95213/142‑1 (MQ=255) gggataccgccttaaatggcgaagaaacgggcgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 2:253386‑M2/5‑1 (MQ=255) aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGc < 2:423618‑M2/10‑1 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaggaaggtgcga > 2:331971/1‑134 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttacCTAAAAAAACGACTCACATTATTc > 2:168248‑M2/122‑145 (MQ=255) aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCCCATTGTTCCGTta > 2:145466‑M2/117‑145 (MQ=255) ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGcc > 2:253871‑M2/110‑145 (MQ=255) taatgcgtcgCACTCACAAACAAGCAATTACAGTTGTAAGTTCCGTTTCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa < 1:149807/136‑1 (MQ=255) tGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCATTTTCATCCGGAACCCGGACGAAAGTAAAACTGCATATGAATTGCACTAAAAAAGGTACTAACATAGTTCCGTTATAAAGCCTGAAATAGATca > 2:10149/1‑145 (MQ=255) tcaaggcatgtacggcagaaagaatcggcacaaacatgaagaaatgaaatgactgagtcagccgagaagaatgtccccgcttattcgcaccttcaCTAAAAAAGCGACTTACATTGTTCCGTTATAATGCCTGAAGTAGATcaca < 1:254980‑M2/50‑1 (MQ=255) cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGACcaca > 1:228208/1‑145 (MQ=255) aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGa < 2:381469‑M2/52‑1 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcggccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACACTGTTCCGGTATAATGCCTGAAGTGGATCACAGAATATATcttg > 1:337363‑M2/84‑144 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTAAAGTAGAGCACAGAATATATCTTc > 1:403917‑M2/84‑145 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:250449‑M2/81‑145 (MQ=255) gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGCCTCACATTGTTCCGCTATAATGCCTGAAGTAGATCACAGAATATATCTCCAgggct > 2:103228/1‑143 (MQ=255) aaaaaatcgcctcaaacatgtagcaatgaaatgactgaggtagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTCGATCACAGAATATATCTTCAGGGAt < 2:34982‑M2/68‑1 (MQ=255) aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttaatcacaccatccCTAAAAAAGCGACTCACATTATTTCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc > 2:33640‑M2/75‑145 (MQ=255) ccTCCCTGGCAGTTTCATCCGGAACCCGAACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATCCCTAAAATCGGTTTCATTTCATATCTTCAGGGATCGCATATCTATTAAGTTaat > 2:138467/1‑143 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttcccgcttattcgcaccttccCTAAAAAAGCGACTCACCTTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactca < 1:116394‑M2/90‑1 (MQ=255) cccTGGCAGTTTCATCCGGAACTCGGACGAAAGTTAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac < 2:326514/145‑1 (MQ=255) agcgaaatgactgatccagccgagaagaatgtccccgcttatacgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAAGGCCTGAAGTAGATCACAGAATCTATCTTCAGGTATCGCATATCTATTAAGTTactcact < 2:420375‑M2/92‑1 (MQ=255) gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAATTTACTCACTCtt > 1:95487‑M2/51‑145 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCGTATCTATTAAGTTACTCACTCtttt > 1:270210‑M2/49‑145 (MQ=255) cgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc < 2:94154‑M2/112‑1 (MQ=255) ccGGACGAAAGTAAAAATACATATGAGTTGCCCACATAAATCTACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcg > 2:311847/1‑145 (MQ=255) aagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgt > 2:278303‑M2/30‑145 (MQ=255) cGAAAGGAAAAATGCATATGCGTTGCACTACAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtgt < 1:103228/145‑1 (MQ=255) aatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTCTAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTAATCACTCTTTTCTATTTCTGACTTGCGCGTGtt > 1:165946‑M2/27‑145 (MQ=255) aGTAAAAACGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt < 2:162723/145‑1 (MQ=255) ttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAAGGCCTGAAGTAGATCCCAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGcgggtttgtgcaactgt > 2:209767‑M2/16‑137 (MQ=255) accttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGa < 1:417491‑M2/138‑1 (MQ=255) gTTGCACTAAAAAATCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATTCGCGTGTTTGTATAAATGTAAATGTGAg < 2:226669/145‑1 (MQ=255) cACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCt > 1:313752/1‑145 (MQ=255) cCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCtt < 2:304535‑M2/144‑1 (MQ=255) | CTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTT > CP009273/2400113‑2400400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |