New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2282398 =	NA (NA)	5 (0.220)	5/266	NT	31.2%	noncoding (1195/1195 nt)	IS5	repeat region
	?	CP009273	3178254 =	11 (0.480)					coding (56/291 nt)	yqiC	BMFP family putative fusogenic protein

CAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTC  >  CP009273/3178110‑3178385                                                                                                                                                 |                                                                                                                                    caAAGCATAGCTTAACATAATTCTGGTTTATGACTTACCCTTATCGCCCTACACTGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAACAATTGAGCAAAACGCGCGCCAGGTTCACGAATCAATGcc                                                                                                                                     >  1:219317/1‑145 (MQ=255)     gCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTaaa                                                                                                                                 <  1:51997/145‑1 (MQ=255)           cTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTAAAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACAAAACAATGCCTAAAGGAATc                                                                                                                           >  1:161524/1‑145 (MQ=255)           cTTCACATAATTCTGGTTTATGACTTACCCATATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATc                                                                                                                           <  1:287683/145‑1 (MQ=255)                          gTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGaa                                                                                                            <  2:44972/145‑1 (MQ=255)                               tGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGAcgt                                                                                                       >  2:400915/1‑145 (MQ=255)                                 aCTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTgg                                                                                                     >  1:385232/1‑145 (MQ=255)                                   ttACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGAAAACGACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGgag                                                                                                   >  1:175674/1‑145 (MQ=255)                                   tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACGGACTCAGGGAGTGAGCGGAAgaggaggag                                                                                                   >  1:135887‑M2/111‑145 (MQ=255)                                                          tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCCGGGAGCTCGGGGAAGAGGTGCAGAAAAAAAGCCGCCAAACCCTCCa                                                                            >  1:400451‑M2/88‑145 (MQ=255)                                                                   ccTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCt                                                                   <  1:131715/145‑1 (MQ=255)                                                                       tCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGAcg                                                               <  2:63065/145‑1 (MQ=255)                                                                           tACACGGAAACTACCACGATTGACCCGAAAAAAATTGAGCACAGCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGcc                                                           <  2:65745/145‑1 (MQ=255)                                                                                 aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGCAGATGTTGAGAAAAAAATCCGCCAAACCCTACACGCGCAGCTGACGCGCCTCGAcc                                                     <  2:224827‑M2/81‑1 (MQ=255)                                                                                    aCTTCAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTg                                                  <  1:391153/145‑1 (MQ=255)                                                                                           tGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCg                                           <  2:385232/145‑1 (MQ=255)                                                                                                               ccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGAGGTCCaaa                       >  1:322750‑M2/35‑145 (MQ=255)                                                                                                                                    attcgccccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGTAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTc  <  2:135887‑M2/132‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                    CAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTC  >  CP009273/3178110‑3178385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.