| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3938338 | NA (NA) | 17 (0.240) | 6/284 | 9.8 | 31.2% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 39 (0.520) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCATGCACCGAAGCTGCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA > CP009273/4032023‑4032236 | ccATGCACCGAAGCTGCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCt > 1:81783/1‑149 (MQ=255) cccGATGCTGCGGCCGGGAGTCTATGGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGTCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg < 2:221816/148‑1 (MQ=1) aCCGAAGCTGCGGCAGCGACACTGT‑GTGTTGATGGGTAGGGGAGCGTTCCGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGTTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg < 2:84646/149‑1 (MQ=255) aCCGAAGCTGCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg < 2:690213/149‑1 (MQ=40) cGAAGCTGCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa > 2:780517/1‑149 (MQ=255) cGAAGCTGCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:652093/149‑1 (MQ=255) cGAAGCTGCGGCAGCGACACTAT‑GCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:853564/149‑1 (MQ=25) gCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg > 1:922419/1‑149 (MQ=255) cGACACTGT‑GTGTGGTTGGGTAGGCGAGCGGTCTGGAAGCCTGTGAAGGGGTGCGGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCGGGAAGACCAAGGGTTCCt < 1:453217/149‑1 (MQ=11) cGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt < 1:691225/149‑1 (MQ=40) cGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGCGCACGTGTGCCGTCAGGCCTGCAGGAGGTATCGCAAGTGCGAATGCCGACATAAGTAACGATAAAGCGGGTGATTGGCCCGCTCGCCGGAAGACCAAGGGTTCCt > 1:1016676/1‑149 (MQ=11) acacTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAGGGGTTCCTGt > 1:1143780/1‑149 (MQ=38) acacTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt < 2:1045785/149‑1 (MQ=38) aT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGCATGCTGACACAAGTATCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGTCCAAGGGTTCCTGTCCAAc < 1:980303/149‑1 (MQ=255) t‑gtgTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg > 2:1031689/1‑149 (MQ=34) cgttgttGGGTAGGGGAGCGTTCTGTAAGCCTTTTTTTTTTTTTTTTTTGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt > 1:815051/2‑149 (MQ=11) gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCAAACGTTa > 2:720555/1‑149 (MQ=17) gttgttGGGTAGGGGAGCGGTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATAAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAGAGGCCGCTCGCCGGCAGACCCAGGGTTCCTGTAGAGCGTTa > 2:640690/1‑149 (MQ=11) tgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAAt < 2:968881/149‑1 (MQ=32) tgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAAt > 2:117285/1‑149 (MQ=32) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg > 2:967126/1‑149 (MQ=32) ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg > 1:476898/1‑149 (MQ=32) tgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAACAGAAGGGCGAATGCTGACAGAGGTAGCGATAAAGCGGGTGAAAAGGCCGCTCGCCGGAAGACCAAGGAAATCTGGCCAACGATAATCgt > 1:665258/1‑148 (MQ=11) gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAACCggg > 2:927890/1‑149 (MQ=17) ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg > 1:418407/1‑149 (MQ=32) aGGGGAGCGTTCGGTAAGCCGGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGAGGGTGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg < 2:1142805/149‑1 (MQ=11) gaccGTTCTGTGGGCCAGTGAAGGTGTGCTGTGAGGCATGCGGGAGGCATCAGAAGTGCGAATGCTGACATAAGTAACGAGAAAGCGGGCGAAAAGCCCGCTCGGCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTg < 1:696631/146‑1 (MQ=11) cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt < 2:81783/149‑1 (MQ=32) ttCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg > 2:139693/1‑149 (MQ=32) gcgTAAGCCTGTGATGGGGTGCTGTGAGGCATGCTGGAGGTAACAGCAGTGCGAATGCGGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCCAGGGTTTCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc < 2:598934/147‑1 (MQ=11) tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc > 2:519541/1‑149 (MQ=17) tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAGAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTGAGCGGGGCAGGGGGAGGCGTcc > 1:923454/1‑149 (MQ=11) tAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAAGGTGAGTCGAcccc > 1:494591/1‑149 (MQ=17) aaGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGCCCCCt > 2:565054/1‑149 (MQ=17) aGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGACTGCTGTCATAATTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTCACCGGGGCAGGGTGAGCCGCCCCCTa > 2:840787/1‑149 (MQ=11) gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCg > 2:1040883/1‑149 (MQ=31) gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGAGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGGGAGTCGACCCCTAAGGCg > 1:722909/1‑149 (MQ=14) tgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAGAAGCCCGCTCGCCGGAAGACCACGGGGTCCTGTCCAAGGTTAATCGGGGCAGGGTGACTCGACCCCTAAGGCGa > 1:470068/1‑149 (MQ=11) tgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa > 2:1180347/1‑149 (MQ=11) tgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa > 2:1114731/1‑149 (MQ=11) | CCATGCACCGAAGCTGCGGCAGCGACACTAT‑GTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA > CP009273/4032023‑4032236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |