| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1046001 | 58 (0.950) | 50 (0.820) | 43/292 | 0.5 | 62.5% | intergenic (+15/+418) | insB1/cspH | IS1 transposase B/stress protein, member of the CspA‑family |
| ? | CP009273 | 1973115 = | 2 (0.030) | intergenic (‑661/‑119) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein | |||||
Only 100 of 108 total aligned reads displayed.
GCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTG > CP009273/1045860‑1046148 | gCGGTATAACCTGAACCCGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGa < 1:613779/144‑1 (MQ=17) cGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAc > 1:701439/1‑144 (MQ=32) aaCCTGCATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCACAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatcttta < 1:818316‑M1/144‑10 (MQ=255) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttacta > 1:385718‑M1/1‑132 (MQ=255) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatatttacta > 1:467336‑M1/1‑132 (MQ=255) gAATCTGAGGCAGCACCTGGCACGGCTGGGACGGCAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTCTCTATAACTTCGAGTCAATACCttatctttactaaaaatca > 2:288535‑M1/1‑130 (MQ=255) gAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGc < 1:165682/144‑1 (MQ=38) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcaga < 2:259123‑M1/149‑22 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGGTGGAGTCATTACCGACAATACGTACGCTTg > 1:255514/1‑144 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCGGCATGACAAAGTCATCGGGCAATATCTGAACATAAAACACTAGCAATAACTTGGAGTCATTACCGACAATACGTACGCTTg > 1:210581/1‑144 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTAGAGCGGCAGTACAAAGTAATCGGTTCGTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTAGGCTTGGGATc > 2:248203/1‑149 (MQ=14) cTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCCGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTga < 1:285541/144‑1 (MQ=255) tGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag < 1:808240/144‑1 (MQ=255) gAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcag > 1:256278‑M1/1‑124 (MQ=255) gcagcaCCTGGCACTGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCa < 1:125290/144‑1 (MQ=255) agcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTTGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatattt < 2:754603‑M1/149‑31 (MQ=255) cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttaccgg > 2:494110‑M1/1‑114 (MQ=255) cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatattt < 1:772551‑M1/144‑31 (MQ=255) tgggatggctgggaCGGAAGTCGCTGTCGTTCTTAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCACTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatcgttactaataatcagactaatatttacctgt < 2:343931‑M1/143‑37 (MQ=255) tGGCACGGCTGGGACGGAAGTCGCTGTCAATCTCAAAATCGGTGGAGCTGCATGACAAAGTCAACGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTAGCGACAATACGTACGCTTGAGATCAGGATTGTCTACtt > 2:677687/1‑149 (MQ=255) ggCACGGCCGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttac < 1:933158‑M1/144‑33 (MQ=255) gCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacc > 1:300793‑M1/1‑111 (MQ=255) cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgac < 2:528917‑M1/149‑42 (MQ=255) cTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:952180/144‑1 (MQ=255) cTGGGACGGAAGTCGCTGTCGTTCTAAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAACTTGTAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:108717/144‑1 (MQ=255) gggACGGAAGTCGCTGTCGTTGTCAAAACCGGTGGAGTCTCATGATAAAGTCATCGGGCAGTATCTAAACATAAACCTCTATCAATAAGTTGGAGGCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:308311/144‑1 (MQ=18) gggACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACGTAAAACACTATCAATAGGTTGGAGTCATTACCGACAATACGTACGCTTGGGATCAGGGTTGTCTACTTTGAGTATAAc > 2:22560/1‑149 (MQ=255) gggACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAc < 2:628361/149‑1 (MQ=255) gggACGGAAGTCGCTGGCGTTCTGAAAATCGGTGGAGCTGCATGACAAATTGATCGGGCATTAACTGCACCTAAAACTCTGTCAATTAGTTGGAGTCATTACCttctctttactaataatcagactaatatttacctgtttgac < 1:155059‑M1/144‑42 (MQ=255) gACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtat < 1:73458/144‑1 (MQ=255) ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagt > 1:281432‑M1/1‑98 (MQ=255) ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATGATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccggct > 1:293608‑M1/1‑98 (MQ=255) cgtCGCTGTCGTTATCCATATCGGTGGATCTGCATGACACAGTCATCGGGCATTATCTGAACATAAAACACTTTCAATAAGTAGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgg < 1:71982‑M1/143‑50 (MQ=255) aGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgt < 2:331644/149‑1 (MQ=255) tCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGa < 2:95453/149‑1 (MQ=255) tCGCTGTCGTTCTAAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCt > 1:658976/1‑144 (MQ=255) cGCTGTCGTGCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTTGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggat < 1:850139‑M1/144‑53 (MQ=255) gCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtg > 1:446645/1‑144 (MQ=255) tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATTGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgtg > 1:599436/1‑144 (MQ=255) tCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTTATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaatcatcagactaatatttacctgtttgaccgagttgggattgcgtcgttt < 2:583613‑M1/149‑63 (MQ=255) gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttct < 2:890007‑M1/149‑65 (MQ=255) tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggcttgcgtcatttctccat > 2:67415‑M1/1‑81 (MQ=255) aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCt < 2:742043/149‑1 (MQ=255) aaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCttt > 1:313454/1‑144 (MQ=255) cGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGGCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTCTCCt < 1:232531/144‑1 (MQ=255) tGGCGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattagga < 1:787017‑M1/144‑74 (MQ=255) tGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGATGCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCAt > 1:204721/1‑144 (MQ=255) ccgCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCa < 2:749660/147‑1 (MQ=255) tGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagcttta < 2:987246‑M1/149‑85 (MQ=255) cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACAGCTTg > 1:135181/1‑144 (MQ=255) gACAAAGGCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtatat > 2:874568/1‑149 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtca < 2:970811‑M1/149‑91 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtca < 2:844713‑M1/149‑91 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggaggaaagctttactgtca > 2:984281‑M1/1‑59 (MQ=255) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacc > 2:840407‑M1/1‑57 (MQ=255) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATGCGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCACCCTTTCCTCATACCGCTTGCACTATATACt > 2:697913/1‑149 (MQ=255) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtat > 1:573370/1‑144 (MQ=255) tCATCTAGCATTATCAGAACAAACAACACTATCAATAAGTTGGAGCCATACCCTACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCgg < 2:913611/149‑1 (MQ=255) cATCGGGCATTATCTGAACATAAAACACTATCTATAAGTGGTAGTCATTACCGACAATACGTACGCTTGAGATCAGGCTTGACTACTTTGAGTATCACACCCTTGTTAAATCTCCCTTTCCGCATACCGCTTGCACTATATACt < 1:163392/144‑1 (MQ=37) aTCGGGCATTATCTGAACATAAAACACTATCACTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTg < 1:729314/144‑1 (MQ=255) cGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactactaatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggcgcaaagctttaacgtctgccgc > 1:197194‑M1/1‑49 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaa < 1:441752‑M1/144‑97 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCgg > 1:859150/1‑144 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAgg < 2:741194/149‑1 (MQ=255) gCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactgataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcaca < 2:331695‑M1/149‑104 (MQ=255) taactaaaCAAAAAACACAAACAATAAGTTGGAGTCATTACCCACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgc < 2:403829/143‑1 (MQ=255) tATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgc < 2:642065/149‑1 (MQ=255) tATCTGAACATAAAACACTATCAATAAGTCGGTGTCAATACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgc < 2:403966/149‑1 (MQ=255) tctcagtagaaaaCACTATCAAGAAGTTGGAGGCATTACCGACAATACGTACGCTTGAGATCATGATTGTCCACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGaaa < 1:26562/135‑1 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataa > 2:648985‑M1/1‑40 (MQ=255) cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTCCTTAGAGTATAACCTCCTTGTGCAATCTCCCTCTCCTCACACCGCCTGCACTACATACTGCGGGTAGGAAAg < 1:949957/144‑1 (MQ=38) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaa > 2:488770‑M1/1‑36 (MQ=255) aCATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattcggagtaaagcgttaaggtcacctgaagttcacagaataaggaac > 2:194787‑M1/1‑35 (MQ=255) aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAATTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGCAAGgcgc > 1:621681/1‑144 (MQ=255) cATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgcgcg > 1:67009/1‑144 (MQ=255) cATAAAACACTAACAATAAGTTGGAGTCCTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGCATAACATCCTTGTGAAATCTCCCTTTCCTCACACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCagag < 2:230163/149‑1 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCa > 1:245003/1‑144 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaaca > 1:912787‑M1/1‑29 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattagaagtaaagcaataatatcacctgaagttaaaagaataaggaaaagatta > 2:122423‑M1/1‑29 (MQ=255) cacTGTCAATAAGTTGGAGTTATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAGTCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAggg < 1:706421/144‑1 (MQ=255) cgatcTATAAGTTTGAGTCATTAACttatctttactaataatgagactaatatttgcctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgag < 2:115709‑M1/147‑125 (MQ=255) tATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATaa > 2:614287/1‑149 (MQ=255) caacaaGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatga < 1:254256‑M1/144‑124 (MQ=255) aaTAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctata > 2:74234‑M1/1‑20 (MQ=255) aaTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGCGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGGAGGGGGACATATAAGAtt > 2:98604/1‑149 (MQ=255) aaTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTCCACAATATACTGCGGGCAGGAAAGGCGCGCAGAGGGAAAtata > 1:568549/1‑144 (MQ=255) aaGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGa < 1:946718/144‑1 (MQ=255) aaGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGtt < 2:930940/149‑1 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAAGAAAGGCGCGCAGAGGGAAATATAAAAt > 1:187154/1‑144 (MQ=255) ggAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatatt < 2:784831‑M1/149‑138 (MQ=255) aGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatattct > 2:572660‑M1/1‑10 (MQ=255) aGTCATTACCGACAATACGTACGCTTGAGATCAGGCTTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGCCGAGAAGGCGGAAACAAAAGATGGTTaa > 1:427637/1‑144 (MQ=255) gtaactACCGACAATACGTGCTCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAAc < 1:666355/139‑1 (MQ=255) tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATccc < 2:968743/149‑1 (MQ=255) aTTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgggctatagcaatattc > 1:50148‑M1/1‑6 (MQ=255) ttACCGACAATACGTACGCTTGAGATCAGGCTTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGCAACGGTAAGATTGTTAACTATc > 1:386357/1‑144 (MQ=255) tACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacagtttatgagctatagcaatattctt < 1:646412‑M1/144‑141 (MQ=255) tACCGACAATACGTACTCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATcc < 1:227500/144‑1 (MQ=255) ccttatctttactaataatcagactaatctttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatattcttgtcgctg > 2:575240‑M1/1‑2 (MQ=255) cttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatattcttgtc < 1:88927‑M1/144‑144 (MQ=255) | GCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTG > CP009273/1045860‑1046148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |