New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	1 (0.040)	11 (0.470)	11/244	NT	92.1%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	1 (0.040)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAT  >  CP009273/1203116‑1203406                                                                                                                                                  |                                                                                                                                                  tCCGGTGCCAGCCCGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTTTCGAAAACCTTGGTTTGGGAGAAGGctc                                                                                                                                                <  1:305143‑M1/149‑4 (MQ=255)    cgggcttgcctgtagAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGGTAAGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                             <  2:268261‑M1/142‑7 (MQ=255)       tacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt                                                                                                                                          >  2:437870‑M1/125‑149 (MQ=255)                 aggagtggcggcacgaccAGTTGCTTGCCGCACTTCGCGCGCTGCTTTTAAGCCGAATGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                                                <  2:313302‑M1/143‑20 (MQ=255)                   ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGTGAAGGGGCAAAACTCAATGCAGCAAc                                                                                                                              <  2:463162‑M1/37‑1 (MQ=255)                           tggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt                                                                                                                      >  2:205629‑M1/105‑149 (MQ=255)                             gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                                    >  1:405600‑M1/103‑149 (MQ=255)                               tacccgctacttaccgcactgCGCGCGCTGCTGTTAAGCCGCAAGCATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                                  <  1:381289‑M1/142‑34 (MQ=255)                                         ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcc                                                                                                        >  2:363930‑M1/1‑106 (MQ=255)                                           acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccac                                                                                                      >  2:249721‑M1/1‑104 (MQ=255)                                               tacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                                  >  2:291375‑M1/85‑149 (MQ=255)                                                 catagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                                >  1:360146‑M1/83‑149 (MQ=255)                                                           tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGccctgcatcacctgttggtgtcccggtgtcgtggccttcagccactccgccaacaggctgg                                                                                      >  2:258360‑M1/1‑88 (MQ=255)                                                            gctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc                                                                                     <  1:165511‑M1/149‑63 (MQ=255)                                                            agaatgttaaatccccctggtaaaagcaggaatgatgccatttgctttttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                     >  2:183647‑M1/72‑149 (MQ=255)                                                                            ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                     >  1:70598‑M1/56‑149 (MQ=255)                                                                            ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                     >  1:211079‑M1/56‑149 (MQ=255)                                                                                 taaagcaggaatgatgccatttgcttgttatttcttcattttcataatcgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                                >  1:386621‑M1/51‑149 (MQ=255)                                                                                   aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCa                                                              <  2:374503‑M1/101‑1 (MQ=255)                                                                                      gCGTTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGtcctgcattacctgtttgtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttct                                                           <  2:283183‑M1/149‑89 (MQ=255)                                                                                                aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGGATTGAGCGATCAGTAAGCATTCAgc                                                 >  2:343359/1‑148 (MQ=255)                                                                                                 ccatttggttgttatttctgcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                                                >  2:432865‑M1/35‑149 (MQ=255)                                                                                                    gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccc                                             <  1:153869‑M1/149‑103 (MQ=255)                                                                                                    gATGGCACTGTGCAAACGGCTCTAGGAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaactgcaatggtgccgctttttctgctgaagaataccc                                             >  1:260933‑M1/1‑47 (MQ=255)                                                                                                                  aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg                               <  2:209741‑M1/149‑117 (MQ=255)                                                                                                                   ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGGTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa                              <  2:194910‑M1/133‑1 (MQ=255)                                                                                                                                       tttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctggtgaagaatacccggaactggcaaaggcttatccgacaaataaattgc          <  1:207574‑M1/149‑138 (MQ=255)                                                                                                                                               aaGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcacaggcttatccgacaaataaattgcctgattta  >  2:144880‑M1/1‑4 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAT  >  CP009273/1203116‑1203406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.