New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	39 (1.460)	36/276	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTT  >  CP009273/360142‑360433                                                                                                                                                 |                                                                                                                                                    ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggga                                                                                                                                                 <  1:257204/149‑1 (MQ=38)  cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggcatggggaa                                                                                                                                                >  2:44025/1‑149 (MQ=18)  cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaa                                                                                                                                                >  2:436444/1‑149 (MQ=38)             tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGa                                                                                                                                     <  1:413900/149‑1 (MQ=255)                     aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGGGCCTTCCGTTTTATTTGATGCATGGGGAATTGGGGATACATTCTTGAGGCCGaag                                                                                                                             >  2:110371/1‑148 (MQ=14)                      aCGTTCAACTCCGCTCCCGGCGGATTTGTCCTCCTCAGGAGAGCGTTCACCGAGAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGCTTTATTTGATGCCTGGGGTATTGGGAATTAATTCTTGAAGACGAAAg                                                                                                                            <  1:262179/149‑1 (MQ=17)                         ttCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGa                                                                                                                                     <  1:456403/137‑1 (MQ=255)                         ttCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGa                                                                                                                                     >  2:456403/1‑137 (MQ=255)                          tCAAATCCGCTCCCGGCGGATTTGTCCTACCCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCAAAGACTTTCGACTGAGACTTAAGTTGTATTTGATACCAGGGGATTCGGGAATGAAGTCTTGACAACAAAAGGGcc                                                                                                                        >  2:322859/1‑149 (MQ=14)                                                tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTtata                                                                                                  >  1:336894/1‑149 (MQ=255)                                                 gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGGATTATTTCTTGAAGAAGAAAGGGCGTCGTGGTACGCCTATGTTTATAg                                                                                                 >  2:81161/1‑149 (MQ=18)                                                    cTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGtt                                                                                              >  1:279596/1‑149 (MQ=255)                                                    cTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAAGAAAGGCCCAGTCCTTGGACTGCACCAAGAGTTTTATTCGATGCCGGGGGAATTGGGTATTAATTCTTGAAGGCGACAGGGCCTCGGAAGACGCCGAttatactacgtg                                                                                              >  2:79120/1‑139 (MQ=12)                                                       cgcAGGAGAGCGTTCACCGAAGAACAACAGATAAAACGAAGGGCACAAACTTATGACTTAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAAGTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                                           <  1:89656/147‑1 (MQ=25)                                                            gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCAt                                                                                      >  1:424023/1‑149 (MQ=255)                                                                        cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATGGGTTAATGTCGTGGGAAGATCCAg                                                                          >  1:30947/1‑149 (MQ=255)                                                                                 atggATAAAACGAAAGGCCCAGGCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAgg                                                                 <  1:3422/146‑1 (MQ=255)                                                                                     aTAAAACGAAAGGCACAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTGATGTCATGGGAAGATCCAGCCGACCAGGCttt                                                             >  2:13884/1‑149 (MQ=255)                                                                                             aaaGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGccc                                                     >  1:420552/1‑149 (MQ=255)                                                                                                ggCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCcgcg                                                  >  2:357829/1‑149 (MQ=255)                                                                                                  cccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                                <  1:288487/149‑1 (MQ=255)                                                                                                   ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGTGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGc                                               <  1:389151/149‑1 (MQ=255)                                                                                                        cTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGCCGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCCGCCGACCAGGCTTTCCACGCCCGCGTGCCGcgc                                          >  2:167019/1‑147 (MQ=255)                                                                                                           tCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCAt                                       >  2:124406/1‑149 (MQ=255)                                                                                                           tCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCAt                                       <  2:279596/149‑1 (MQ=255)                                                                                                             gACTGAGCCTTTCGTTGTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGt                                     <  2:271842/149‑1 (MQ=255)                                                                                                                tGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCGTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAGGATCGCGCCGACCAGGCTTTCCACGCCCGCGTGCCGCCCCCTGTCGt                                  >  2:361244/1‑149 (MQ=255)                                                                                                                tGAGCCTTTCGTGTTATTTGATGCATGGGGAAAAGGGAATTACTTCTTGAAGACGAAAGGGCCTCTTGATACGCCTATTTTTATGGGTTAATGTGATGGGCACCTCCAGCCAAGCACGCGTGCCACGCCCGCGGGCCGCGCCATGGCGt                                  >  2:98308/1‑149 (MQ=255)                                                                                                                    ccTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCCAGCCCGCGTGCCGCTCCATGTCGTTcgc                              >  1:326214/1‑149 (MQ=255)                                                                                                                    ccTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGCCGTTcgc                              >  2:73109/1‑149 (MQ=255)                                                                                                                      tttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCCCCATGTCGTTcgcgc                            >  2:347840/1‑149 (MQ=255)                                                                                                                        tCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                          <  1:209725/149‑1 (MQ=255)                                                                                                                           ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                       >  1:71488/1‑149 (MQ=255)                                                                                                                            tttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtct                      <  1:435718/149‑1 (MQ=255)                                                                                                                                                ttgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGtt  <  1:166402/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTT  >  CP009273/360142‑360433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.