Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 2,400,257 IS5 (+) +4 bp 54.3% intergenic (‑137/‑780) lrhA ← / → alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2282398 =NA (NA)26 (0.980) 23/276 NT 61.2% noncoding (1195/1195 nt) IS5 repeat region
?CP009273 2400257 = 16 (0.620)intergenic (‑137/‑783) lrhA/alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2
* ? CP009273 = 2283592NA (NA)12 (0.450) 12/276 NT 42.1% noncoding (1/1195 nt) IS5 repeat region
?CP009273 = 2400260 16 (0.620)intergenic (‑140/‑780) lrhA/alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

TGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCC  >  CP009273/2400109‑2400405
                                                                                                                                                    |                                                                                                                                                    
aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  2:23960‑M2/1‑1 (MQ=255)
 acaactggggataacgccttaaatggcgaagaaacagtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     <  1:428244‑M2/2‑1 (MQ=255)
  aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                                    >  1:252138‑M2/147‑149 (MQ=255)
   aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   <  1:88245‑M2/4‑1 (MQ=255)
   aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   >  2:162637‑M2/146‑149 (MQ=255)
    cTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGTAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCGTATGAGTTGCACttag                                                                                                                                                  >  2:314258/1‑146 (MQ=255)
    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa                                                                                                                                                  <  1:272867‑M2/5‑1 (MQ=255)
        taagatatTATCCATTACCGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACCCACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCCTCCGGAACACGGAAAAAAGAAAAAATGCATATGAGTTGCACTAAAAAAg                                                                                                                                              <  2:170131/145‑1 (MQ=255)
         ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGc                                                                                                                                             >  1:382092‑M2/140‑149 (MQ=255)
          atatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg                                                                                                                                            >  1:415728/1‑149 (MQ=255)
                   ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaacatcggctcaaacatgaagaaatgaaatgactgagtcagacgagccgaatttcccagcttatccgcgccttccCTAAGAACGCGACTAACAtt                                                                                                                                   >  1:63400‑M2/130‑149 (MQ=255)
                   cACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAtt                                                                                                                                   <  1:85977/149‑1 (MQ=255)
                     cTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGt                                                                                                                                 >  1:75046/1‑149 (MQ=255)
                      aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATtttt                                                                                                                                <  1:301438‑M2/23‑1 (MQ=255)
                            gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatggagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACAAGCGACTCACATTGTTCCGTta                                                                                                                          >  1:231982‑M2/121‑149 (MQ=255)
                              ggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTtata                                                                                                                        <  1:140831/149‑1 (MQ=255)
                                 tCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATg                                                                                                                     >  1:150419/1‑149 (MQ=255)
                                 tCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGCCCGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACCCCCATTGTTCCGTTAGAATg                                                                                                                     >  2:65259/1‑149 (MQ=255)
                                 tCATACTGAGCTGGTTAATGCTGTGCACACACAAAAAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACCTTGTTCCGTTATAATg                                                                                                                     >  1:43571/1‑149 (MQ=255)
                                        gAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTCAgtaaggtgcgagcaagtccctgatatgagatcatgtt                                                                                                              <  1:281847‑M2/149‑38 (MQ=255)
                                           ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGtat                                                                                                           <  1:210139‑M2/44‑2 (MQ=255)
                                                tAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                                                                      <  1:30377‑M2/149‑46 (MQ=255)
                                                  gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg                                                                                                    <  1:285340‑M2/51‑1 (MQ=255)
                                                     cTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACGCCCATTGTCCCGTTATAATGCCTGAAGTAGATCACAGAat                                                                                                 >  2:195401/1‑149 (MQ=255)
                                                          gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc                                                                                            >  1:276262‑M2/91‑149 (MQ=255)
                                                          gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGACTGAagtagatcagagccaatatc                                                                                            >  1:221155‑M2/91‑141 (MQ=255)
                                                              ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgaaaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATATTCa                                                                                        >  2:300915‑M2/87‑149 (MQ=255)
                                                               tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg                                                                                       <  1:23893‑M2/64‑1 (MQ=255)
                                                                   acaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                                   >  1:58047‑M2/1‑85 (MQ=255)
                                                                       aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa                                                                               >  2:418353‑M2/78‑149 (MQ=255)
                                                                           ttCCATTTGTAATGTGCCTCCCTGGCAGTTTAATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGAGACTCCCATTGTTCCGTTATCCTGACTGAAGTAGACTACAGAATATATCTTCAGTCATCTCATATc                                                                           <  2:159499/149‑1 (MQ=255)
                                                                              cATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACTCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcaagtttgtcgtctggtgccattgaactgggttcatcttgggtc                                                                        <  2:23135‑M2/149‑76 (MQ=255)
                                                                                 ctcaaacatgaagaaatgaaatgactgagtcagccgagaggaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACCTTGTTCCGTTATAATGCCTGAAGAAGATCACCGAATATATCTTCCGGGAGCGCATGTCTCTtag                                                                     >  2:374298‑M2/68‑148 (MQ=255)
                                                                                 cctaaacacgaagaagtgaaacgcccgagccagccgagaagactttccccgcttagtcgcatcttccCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTaa                                                                     <  1:89282‑M2/82‑1 (MQ=255)
                                                                                        gtgCCTCCCTGGCAGTTTCATCCGGAACCCGCACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgctatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                              >  1:314258‑M2/1‑64 (MQ=255)
                                                                                          gCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac                                                            <  1:408410/149‑1 (MQ=255)
                                                                                              aaatgaaatgacggagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtt                                                        <  2:416143‑M2/95‑1 (MQ=255)
                                                                                               aatgaaatgactgagtcagccgagaagaattcccccgcttattcgcaacttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt                                                       <  2:63400‑M2/96‑1 (MQ=255)
                                                                                                atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtttt                                                      >  1:206461‑M2/53‑149 (MQ=255)
                                                                                                   ctacgttcacccGCAAACCGGAAGACATTCAAAATGCATATGAGTTGCACTAAggaaggtgccaacaagtccctgatatcagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                                   >  2:306078‑M2/6‑53 (MQ=255)
                                                                                                   aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTa                                                   <  2:276262‑M2/100‑1 (MQ=255)
                                                                                                    cAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgacggaag                                                  <  2:37773‑M2/149‑98 (MQ=255)
                                                                                                       tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGGACTAAggaaggtgcgaacaagtgcctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga                                               <  1:298024‑M2/149‑101 (MQ=255)
                                                                                                       gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTa                                               >  2:323310‑M2/46‑149 (MQ=255)
                                                                                                        actgagtcagccgagaagaattgccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt                                              <  1:110355‑M2/105‑1 (MQ=255)
                                                                                                         tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATg                                             <  2:415728/149‑1 (MQ=255)
                                                                                                          cATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGa                                            <  1:123335/149‑1 (MQ=255)
                                                                                                              tcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATAACTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATg                                        >  2:201752‑M2/39‑149 (MQ=255)
                                                                                                              tcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACAATGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTAACTCTTTTTTATTTATTACATg                                        >  2:303716‑M2/39‑149 (MQ=255)
                                                                                                               ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc                                       >  1:144814/1‑149 (MQ=255)
                                                                                                                   gccgGACCAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                                   >  1:200101‑M2/2‑37 (MQ=255)
                                                                                                                    caggacGAAAGTAACAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgataggagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaccttaccttcgccgacagtgaattcagcagtaag                                  >  2:132061‑M2/3‑36 (MQ=255)
                                                                                                                     agaagaatttccccgcttattagcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAATAAGTTACTCACTCTTTTCTATTTATGACATGAGCgtgt                                 >  1:331922‑M2/32‑149 (MQ=255)
                                                                                                                            aaGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcgcatgaccttcgccgacagtgaattcagcagtaagcgccgtca                          >  1:227123‑M2/1‑28 (MQ=255)
                                                                                                                               tAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat                       <  1:151962/149‑1 (MQ=255)
                                                                                                                               tAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat                       >  2:279784/1‑149 (MQ=255)
                                                                                                                               ccccgcttattcccaccttccCTAAAAAAGCGACTCACATTGTTCCGTTAGAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat                       <  2:11991‑M2/128‑1 (MQ=255)
                                                                                                                                 ccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTCTGACATTCCCGTGTTTGTAtaaatgt                     >  2:365706‑M2/20‑149 (MQ=255)
                                                                                                                                  aaaTGCATATGAGTTGCACTAAggaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccacagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccag                    >  1:245174‑M2/1‑22 (MQ=255)
                                                                                                                                    cttagtcgcaccttccCTAAAACAGCGACTCACATTGTTCCGTTATAAGGCCTGAAGCAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTGTGACATGCGCGTCTTTGTAtaaatgtaaa                  <  1:296250‑M2/133‑1 (MQ=255)
                                                                                                                                     ttcttcgccccgtccCTAAAAAAGCGACCCACATTGTTCCGTTATAATGCCTGAAGGAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat                 <  1:32592‑M2/134‑1 (MQ=255)
                                                                                                                                            gAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTc          <  1:368761/149‑1 (MQ=255)
                                                                                                                                                ttccCTAAAAAGGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGACGACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTg      <  2:307184‑M2/145‑1 (MQ=255)
                                                                                                                                                ttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCcttc      <  2:335614‑M2/145‑2 (MQ=255)
                                                                                                                                                   cCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCGATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc   >  2:109048‑M2/2‑149 (MQ=255)
                                                                                                                                                   aCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc   <  1:132682/149‑1 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaagagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc  <  2:352304‑M2/149‑146 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaggcgccgtcagaccacaaaagagatcgccttgtc  <  2:49104‑M2/149‑146 (MQ=255)
                                                                                                                                                    cTAAAAAAGCGACTCACAGTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTcc  <  1:216918/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCC  >  CP009273/2400109‑2400405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.