New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4532507	59 (0.790)	6 (0.090)	5/278	10.4	9.2%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	CP009273	= 4532803	63 (0.890)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAA  >  CP009273/4532362‑4532651                                                                                                                                                  |                                                                                                                                                 gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                               >  2:929795/1‑149 (MQ=255)  ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt                                                                                                                                              <  2:758589/149‑1 (MQ=255)  ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAGTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATGAATACCAGACAATTGGGGCCAAACt                                                                                                                                              >  1:754918/1‑149 (MQ=255)       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                         >  2:981019/1‑149 (MQ=255)       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                         <  1:230259/149‑1 (MQ=255)       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATAAAAGACAATTGGGACCAAACTGTcaa                                                                                                                                         >  1:1172072/1‑147 (MQ=255)        cGCCAGTAATGCAGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                        <  1:237766/149‑1 (MQ=255)          ccAGCAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                      <  2:120042/149‑1 (MQ=255)            aGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                                    >  1:745432/1‑149 (MQ=255)                            ttGTCGGATTATGGGAAAGAAATAATCTCATAAGCGAAAAATTAAAAAGAGAAGAGGTTTTATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATCGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt                                                                                                                    <  1:312277/149‑1 (MQ=255)                               ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                                 >  2:68004/1‑149 (MQ=255)                                      aggggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGGTTTACCTTTGTGATAAAAAAGATAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                          <  2:658333/147‑1 (MQ=255)                                       tGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCAATAACATAAAAAAGTAACGTATTTTTACTCAAg                                                                                                         >  1:206685/1‑149 (MQ=255)                                       agagaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACACTTGGGGCCAAACTGTCCATATCATAATTAAGTTACGGATTTTTTCTCAAg                                                                                                         <  2:111396/146‑1 (MQ=255)                                                aataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                                <  1:323035/149‑1 (MQ=255)                                                 ataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAATTTACGTATTTTTTCTCAAGCATAAAAata                                                                                               <  1:748359/149‑1 (MQ=255)                                                 agaatCTCATAAACGAAAAATTATAAAGAGTAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata                                                                                               <  2:773387/147‑1 (MQ=255)                                                         aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                       <  1:1075125/149‑1 (MQ=255)                                                         aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                       <  1:1176335/149‑1 (MQ=255)                                                           aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                                     <  2:609317/149‑1 (MQ=255)                                                           aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                                     <  1:707482/149‑1 (MQ=255)                                                                aaaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa                                                                                >  1:552504/1‑149 (MQ=255)                                                                      tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                          <  1:1154503/149‑1 (MQ=255)                                                                            gagaatagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACt                                                                    <  2:145725/149‑1 (MQ=255)                                                                               acgagGTTTGATTTAAATTATTGATGCTGGAGTTAAAAAAACAAATAAATACAAGTCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTTCGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                                 <  2:805354/147‑1 (MQ=255)                                                                               aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                                 >  2:632233/1‑149 (MQ=255)                                                                                agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                <  2:158906/149‑1 (MQ=255)                                                                                 gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAACATAAAAAAAATAAAAAACAACAAAAAGCaagcaaccgtttt                                                               >  1:558169/1‑137 (MQ=255)                                                                                  agGTCTGATTTAACTTCTAGATAATAAAGTTAATAAAAAAATTAATTACAAGACAATTGGGGCCAAACTGTCCATATCCTAATTCAGCCTGGATCTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa                                                              <  1:717537/149‑1 (MQ=255)                                                                                  aagTTTGATTTAACTTATTTATAATAAAGTTAAAAAAACAAATAAATACAAGCCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa                                                              <  2:254138/147‑1 (MQ=255)                                                                                     tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                           >  2:972366/1‑149 (MQ=255)                                                                                       tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGt                                                         >  1:666110/1‑149 (MQ=255)                                                                                         aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAGAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                                       >  1:686186/1‑149 (MQ=255)                                                                                           ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                     >  1:1187504/1‑149 (MQ=255)                                                                                                ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTCTCCATATCATAAATACGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                >  1:40807/1‑149 (MQ=255)                                                                                                taaaagATAATAAAGTTAAAAAAAAAAATAAATACAAGAAAATGGGGGCCAACCTGTCCATATCAGAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAAAAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                <  2:951955/144‑1 (MQ=255)                                                                                                aaaaagaaaaaaaaaTTAAAAAAACAAAAAAACACAAGACCACCGGTGCCAAACCGACCAAATCATAAATAAATCACGTATCTTTTCTCAAGCAAAAAAAAAAAAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                <  2:983099/138‑1 (MQ=255)                                                                                                   ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTGTCCATATCATAAATAAGTTACGTATATTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTa                                             <  1:351208/149‑1 (MQ=255)                                                                                                    tGATAATAAAGTTAAAAAAACAAATAAATACAAGACCATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAt                                            <  2:88417/149‑1 (MQ=255)                                                                                                     gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAGCATAAAAATAGTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                           <  1:929795/149‑1 (MQ=255)                                                                                                           aaaaTTAAAAAAACAAATAAATACTAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                     <  2:991248/149‑1 (MQ=255)                                                                                                           aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                     <  1:232059/149‑1 (MQ=255)                                                                                                            aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTTTAaatt                                    >  1:1063457/1‑149 (MQ=255)                                                                                                              gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaa                                  >  2:154503/1‑149 (MQ=255)                                                                                                               ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                                 >  1:112648/1‑149 (MQ=255)                                                                                                                 aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAACATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                               >  1:775913/1‑149 (MQ=255)                                                                                                                   aaaaaCAAATAATTACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTCTTTTCAAGCATAAAAATATTAAAAAACAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                             <  2:745432/149‑1 (MQ=255)                                                                                                                   aaaaaCAAACAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                             <  2:990668/149‑1 (MQ=255)                                                                                                                         aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTCATATCCAAATGTTTTCTATTATAAAATAATTTCACATCAc                       >  1:228690/1‑149 (MQ=255)                                                                                                                           ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTTTGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt                     >  2:863979/1‑149 (MQ=255)                                                                                                                               ataCAAGACAATTGGGGCCCAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCTTAAAAATATTAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc                 <  2:416643/149‑1 (MQ=255)                                                                                                                                  cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTGACTGTTTGATATGTAAATTATTTCTATTATAAATTAATTTCACATCACCTCCGCtat              >  1:573332/1‑149 (MQ=255)                                                                                                                                   aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCaata             >  2:252497/1‑149 (MQ=255)                                                                                                                                        aaTGGGGGCCAAACTGTACATATCATAAATAATTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaa        <  2:1133272/149‑1 (MQ=255)                                                                                                                                         aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaaa       <  2:552504/149‑1 (MQ=255)                                                                                                                                         aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaaa       <  1:1159605/149‑1 (MQ=255)                                                                                                                                          ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTTTTTTTTTTCTAGGATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg      <  1:401753/149‑1 (MQ=255)                                                                                                                                             gggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATTTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGATa   >  2:1132350/1‑149 (MQ=255)                                                                                                                                              ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACAGCACCTCCGCTATATGTAAAGCTaa  <  1:917801/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAA  >  CP009273/4532362‑4532651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.