Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	877,418	C→A	intergenic (+33/+14)	dacC → / ← deoR	D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a)/deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	877,418	0	C	A	100.0%	192.0 / NA	61	intergenic (+33/+14)	dacC/deoR	D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a)/deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (27/34);  total (27/34)

TTGAGCAGCGTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAATT  >  CP009273/877270‑877559                                                                                                                                                     |                                                                                                                                              ttGAGCAGCGTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCCCTTAATCTTCTGATAACCGGATGGCGCGCAACGTCATc                                                                                                                                               >  1:360874/1‑149 (MQ=255)   gAGCAGCGTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACg                                                                                                                                             <  1:515183/149‑1 (MQ=255)     ggcgtgttcGCTGATGGTGATGGAAAATGGGGAAGAAGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCAGCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGt                                                                                                                                           <  2:611307/141‑1 (MQ=255)     gcagcGTCCGCTGAGCGTGATGGAAAAGGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGt                                                                                                                                           <  2:462190/149‑1 (MQ=255)      cagcGTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGtt                                                                                                                                          <  1:110571/149‑1 (MQ=255)        gcGTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTtat                                                                                                                                        <  1:1121895/149‑1 (MQ=255)          gTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATAc                                                                                                                                      >  1:1049699/1‑149 (MQ=255)             cggttaTCGGGATGGAAACTGTGGAAGAGGGCGGATTCTTTTGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTc                                                                                                                                   <  2:383774/144‑1 (MQ=255)              gCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTCCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCa                                                                                                                                  <  1:1155921/149‑1 (MQ=255)                tGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCAtt                                                                                                                                >  1:320637/1‑149 (MQ=255)                  aTCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTaa                                                                                                                              <  2:596658/149‑1 (MQ=255)                    cGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGCATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATa                                                                                                                            <  2:339655/149‑1 (MQ=255)                      tGATGGAAAATTTGGAATAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACa                                                                                                                          <  2:219818/149‑1 (MQ=255)                       gATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACAt                                                                                                                         <  1:457498/149‑1 (MQ=255)                         tGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGATCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGATTATACGTCCTTACTCCATCa                                                                                                                       >  2:347849/1‑149 (MQ=255)                                      agagGGCGGATTCTTTGGTCGGGTGTGGGGTTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGGCATTAATACATCAACTTAATGCGCTg                                                                                                          >  2:792696/1‑149 (MQ=255)                                       gagGGCGGATTCTTTGGTCGGGTGTGGGATTTGGTGATGATGAAATTCCATGAGTGGTCCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGTGCGGc                                                                                                         <  2:692476/149‑1 (MQ=255)                                         gggCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGt                                                                                                       <  2:687655/149‑1 (MQ=255)                                            cGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGCCATACGGTTATACGTCATTAATACACCAACTTAATGCGCTGCGACTg                                                                                                    >  1:820524/1‑149 (MQ=255)                                             ggATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTgc                                                                                                   <  2:1016346/149‑1 (MQ=255)                                                      ggTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTc                                                                                          >  2:779647/1‑149 (MQ=255)                                                       gTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCCAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGTGCGTACTTca                                                                                         >  1:979812/1‑149 (MQ=255)                                                          gggTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACAt                                                                                      >  1:166086/1‑149 (MQ=255)                                                            gtgtGGGATTTCGAGATGATGGAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATAGATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATAc                                                                                    >  1:872452/1‑149 (MQ=255)                                                             tgtgGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACt                                                                                   <  2:166086/149‑1 (MQ=255)                                                                gggATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCAt                                                                                <  1:1015570/149‑1 (MQ=255)                                                                 ggATTTCGTGGTGATGAAATTCCATCGGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAATCGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATc                                                                               <  2:157945/149‑1 (MQ=255)                                                                 ggATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATc                                                                               >  2:729921/1‑149 (MQ=255)                                                                 ggATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATGAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATc                                                                               >  2:1052551/1‑149 (MQ=255)                                                                  gATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTCCACATACTCATCt                                                                              >  1:182687/1‑149 (MQ=255)                                                                   aTTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCtt                                                                             <  2:1229789/149‑1 (MQ=255)                                                                        gTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCggg                                                                        <  2:917182/149‑1 (MQ=255)                                                                         tgatgatgaAATTCCATCAGTGGTTCGGCAGCTTGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCAGTAATACATCAACTTGATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGc                                                                       <  1:1212931/149‑1 (MQ=255)                                                                         tgatgatgaAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATCCGCTGCGTCTTCGCGCACTTCCCATAATCACCTTCCgtcc                                                                       >  1:443930/1‑146 (MQ=255)                                                                               tgaAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTACGTCTTCGCGTACTTCACATACTCATCTTCCTGGCAACAAt                                                                 >  1:124520/1‑149 (MQ=255)                                                                                 caattcctgtcttGGTTCGTGAGCTGGGTCTGTTAATCTTCTTCTAACCGGATGGCGCGAAACGTCATACGGTTATACGTCTTTAATACTTCAACGTCTTGCGCTGCGTCTGCGCCTACTTCACATTCTCATCTTCCGGGCAACAATCg                                                               <  2:203158/137‑1 (MQ=255)                                                                                 aaaTTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCCTACGGTTATACGTCATTAATACAACAACTTAATGCGCTACGTCTACGCGTACTTCACATACTCATCTTCCGGTcagacatct                                                               >  1:478087/1‑142 (MQ=255)                                                                                     tCCATCAGTGGTTCGGCATCTGTTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTca                                                           <  1:1060571/149‑1 (MQ=255)                                                                                     tCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCCGCGTCTGCGCGTACTTCCCAAACCCATCTTCCGGGCAACAATCGCTcc                                                           >  1:141770/1‑148 (MQ=255)                                                                                      ccATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTcac                                                          <  2:826233/149‑1 (MQ=255)                                                                                        aTCAGTGGTTCGGCAGCTGGTTCTCCTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACCTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTcacca                                                        <  2:905883/149‑1 (MQ=255)                                                                                        aTCAGTGGTGCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTcacca                                                        <  2:786961/149‑1 (MQ=255)                                                                                          cAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTAAATGCCCTGCGTCACCCCGCACTTCACAACCCCATCTACCGGCCAACAAACGCACACcaca                                                      >  1:94786/1‑149 (MQ=255)                                                                                              ggTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTACTCCATCAACTTAATGCGCTGCGTCTGCGCGTACTTCCCATACTCGTCTTCCGGGCAACCATCACTACCCACActat                                                  >  1:312181/1‑149 (MQ=255)                                                                                                 tCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCaa                                               >  2:749739/1‑149 (MQ=255)                                                                                                  cGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCaaa                                              <  1:1057237/149‑1 (MQ=255)                                                                                                  cGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCaaa                                              <  1:686685/149‑1 (MQ=255)                                                                                                  cGGCAGCTGGTTCTCGTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGTGCAACAATCGCTCACCACAATATCaaa                                              <  2:588981/149‑1 (MQ=255)                                                                                                         tGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTACTGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAACCGCTCCGCACAATATCAAAGCGTTTc                                       <  2:320637/149‑1 (MQ=255)                                                                                                                 ttAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCACCAATCGCTCCCCACAATACCAAAGCGATTCAGGTCAcc                               >  1:844425/1‑149 (MQ=255)                                                                                                                 ttAATCTTCTGATAACCGGATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGAACTTCACAAACTCTCCTTCCGGGGAAGAACCGCCAACCACAATTTCAAAGCGTTTCAGGTCAcc                               >  1:1081567/1‑149 (MQ=255)                                                                                                                                 cGGATGGCGCGAAACGTCATACGGTTATACGTCATTACTCCATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAATCGTTTCAGGTCACCCATGCGCGCCGGACGc               <  1:642854/149‑1 (MQ=255)                                                                                                                                  ggATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCa              <  1:779647/149‑1 (MQ=255)                                                                                                                                   gATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACACTACCAAAGCGTTTCAGGTCACCCCTGCGCGCCCAACGCAc             >  2:892153/1‑149 (MQ=255)                                                                                                                                   gATGGCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCAc             <  2:219408/149‑1 (MQ=255)                                                                                                                                      ggCGCGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGTGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCtt          <  1:1084340/149‑1 (MQ=255)                                                                                                                                       gcgcGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCCCCCATGCGCGCCGGCCGCACCttc         >  2:1196212/1‑148 (MQ=255)                                                                                                                                       gcgcGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTg         >  1:314075/1‑149 (MQ=255)                                                                                                                                       gcgcGAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGCCACCCATGCGCCCCGGCCGCACCTTg         >  2:487241/1‑149 (MQ=255)                                                                                                                                         gcgAAACGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACCATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGGCGCACCTTGcc       >  2:31532/1‑149 (MQ=255)                                                                                                                                             aaCGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAAt   >  2:574852/1‑149 (MQ=255)                                                                                                                                              ccGTCATACGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAAtt  <  1:393960/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TTGAGCAGCGTCCGCTGATCGTGATGGAAAATGTGGAAGAGGGCGGATTCTTTGGTCGGGTGTGGGATTTCGTGATGATGAAATTCCATCAGTGGTTCGGCAGCTGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAATT  >  CP009273/877270‑877559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑