New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1045234 =	75 (1.220)	66 (1.070)	59/296	0.1	62.0%	intergenic (‑34/‑55)	gfcA/insA	O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA
	?	CP009273	= 1973123	6 (0.100)					intergenic (‑669/‑111)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

ATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1045369‑1045234 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTA  <  CP009273/1973123‑1972976                                                                                                                                                                                                                                                                                               ATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAGATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAA                                                                                                                                          >  1:604276/1‑149 ATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAA                                                                                                                                          <  2:547431/149‑1   GTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAGCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCTCAGGATAATTAATa                                                                                                                                        >  2:188270/1‑148   GTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATC                                                                                                                                        <  1:312525/149‑1   GTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGGAAGTTGGCAGCATCACCTAAAGATAATTAATC                                                                                                                                        >  2:180095/1‑149      CGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACAATAATATACTAAATCAGTAAGTTGGCAGCATCACCAAAAGATAATTAATCAAT                                                                                                                                     >  1:191489/1‑149       GGCAGTGCTTTTGCCGTTACCCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATC                                                                                                                                    <  1:804838/149‑1           GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTAAAAAACACCATCATACACTAAATCAGTAAGTTGGCAACAACACCTAAAGATAATTAATCAATCACTC                                                                                                                                >  2:17521/1‑149                TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGT                                                                                                                           >  2:25001/1‑149                TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGT                                                                                                                           <  2:328264/149‑1                TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCAACTAAAGATAATTAATCAATCACTCCCGGT                                                                                                                           >  2:960613/1‑149                            CACCACTCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATT                                                                                                               <  1:223778/149‑1                              CCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGCAGCCACTGGATAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTC                                                                                                             <  1:777434/149‑1                               CACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCA                                                                                                            >  1:84643/1‑149                                gCCCCGTCAGTAGCTGGAGAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCGAAAACACCATCAGACCCTAAGTGAGTAAGTTGGCCGCATCACATAAAGATAATTAATCAATCGCTCCCGGTGATCATATAATTTCAA                                                                                                           <  2:588825/148‑1                                     GTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTA                                                                                                      >  1:810411/1‑149                                      gCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAA                                                                                                     <  2:20226/148‑1                                          tacccaAACAGGAGCGACAGCTGATAGAAACAGAAGCGACGGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATGAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTAT                                                                                                 <  2:930216/143‑1                                                     GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGT                                                                                      >  2:865766/1‑149                                                              CTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑GACTGATT                                                                            >  2:455453/1‑149                                                                    GAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGC                                                                      >  2:567944/1‑149                                                                     AAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCA                                                                     >  1:980412/1‑149                                                                       ACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATT                                                                   >  2:726234/1‑149                                                                          GAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAA                                                                >  2:925314/1‑149                                                                             GCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAA                                                             >  1:225900/1‑149                                                                               catTGGAGAACCTCAAAAACACCATCATACTCTATGTCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGT                                                           <  1:930114/146‑1                                                                               cactgcgcAACCTCAAAAACACCCTCATACACTAAATCCGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGT                                                           <  2:270243/141‑1                                                                               CACTGGAGAACCTCAAAAACACCATAATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGT                                                           >  1:504406/1‑149                                                                                ACTGGAGAACCTCAAAAACACCAGCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTG                                                          >  2:989839/1‑149                                                                                  TGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGT                                                        >  2:592636/1‑149                                                                                   GGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTT                                                       <  1:900370/149‑1                                                                                     cGAACCTCAAAACCAACATCATACACTCAATCAGTAAGTTCGCAGCATCACCTAACGATAATTAATCAATCACTCCCGGTGATCATCTAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAA                                                     <  1:17521/148‑1                                                                                     AGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTAGCAGCATCACCTAAACATAATTAATCAATCACTCCCGGACATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGAATTAAACAAGTAGTTAA                                                     >  2:580543/1‑149                                                                                      GAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGCTAAT                                                    >  1:697886/1‑149                                                                                       AACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATt                                                   >  2:351226/1‑148                                                                                        ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATAT                                                  <  2:572682/149‑1                                                                                          CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATAT                                                >  2:826262/1‑149                                                                                          CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATAT                                                >  1:762433/1‑149                                                                                           TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATG                                               >  2:730747/1‑149                                                                                            CAAAAACACCATCATACACCAAATCAGTAAGTTGGCAGCAACACCTAAAGAAAACTAATCAATCACTCCCCATGAACATAAAATTCCAAATCTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGT                                              <  2:555528/149‑1                                                                                               AAAGACCATCATACAGTAAATCAGTAAGTTGGCAGCATCACCTAAAGATACTTAATCAATCACTCCCGGTGGTCATATAATTTCAAATGTGATTATAAGAAAAT‑GTGATATTGATTCTCCGCATTAAACAAGTGGTTATTATAGGTAAc                                           >  2:195161/1‑148                                                                                                       TCATACACGAAATCAGTAAGTTGGCAGCATCACCTAACGCTAAATAATCAATCACTCCCTGTGATCATATAATATCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCA                                   <  1:25001/149‑1                                                                                                          TACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTA                                >  2:728189/1‑149                                                                                                           ACACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAA                               <  2:62926/149‑1                                                                                                            CACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAAC                              >  2:430490/1‑149                                                                                                            CACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAAC                              <  1:806463/149‑1                                                                                                            CACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAAC                              >  1:261893/1‑149                                                                                                             ACTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACA                             >  2:55338/1‑149                                                                                                              CTAAATCAGTAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACAT                            >  1:100071/1‑149                                                                                                                     AGTAAGTTGGCAGCATCAACTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATGATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTG                     <  2:287900/149‑1                                                                                                                      GTAAGTTGGCAGCATCACCTAAAAATAATTAATCAACCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGA                    <  1:953685/149‑1                                                                                                                       TAAGTTGGCAGCATCATCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGAT                   <  1:498327/149‑1                                                                                                                       TAAGTTGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTACTTAAGATTAAGTgggt                   >  2:39467/1‑145                                                                                                                            TGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTG              >  1:343650/1‑149                                                                                                                            TGGCAGCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATGTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTG              <  1:191733/149‑1                                                                                                                                 GCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAATTTTCGGTATTAACATTAAGTTGATTGTTGCCTTT         <  2:219818/149‑1                                                                                                                                 GCATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAACACCAATCTTGAACATTAAGTTGATTGTTGCCTTT         <  2:219868/149‑1                                                                                                                                  CATCACCTAAATATAATTAATCAATCACTGCCGGTGATCATATAACTTCAAATGTAATGATAAGAAAATAGTG‑TACTGACTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTC        <  2:604276/149‑1                                                                                                                                  CATCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTC        >  1:687385/1‑149                                                                                                                                   agCACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCT       <  2:139951/147‑1                                                                                                                                     CACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTT     <  2:84643/149‑1                                                                                                                                     CACCTAAAGATAATTAATCAATCACTCCCGGTGACCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAACTGGTTAATATATGTAAAAAATTTCATTCACATTACGTTGATTGTTGCCTTTCTTT     >  2:946287/1‑149                                                                                                                                      ACCTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTG    <  2:980412/149‑1                                                                                                                                        CTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATGGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTATGTTGTTTGTTGCCTTTCTTTGTA  >  2:757273/1‑149                                                                                                                                        CTAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTA  <  2:762433/149‑1                                                                                                                                        CTAAAGATAATTAATCAATCACTCAAGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTA  >  2:367227/1‑149                                                                                                                                                                                                                                                                                               ATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1045369‑1045234 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGATAATTAATCAATCACTCCCGGTGATCATATAATTTCAAATGTAATTATAAGAAAATAGTG‑TACTGATTCTCCGCATTAAACAAGTGGTTAATATATGTAAAACATTTCATTAACATTAAGTTGATTGTTGCCTTTCTTTGTA  <  CP009273/1973123‑1972976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.