| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4145500 | 18 (0.520) | 12 (0.370) | 10/256 | NT | 36.3% | coding (572/1005 nt) | argC | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
| ? | CP009273 | 4145821 = | 25 (0.760) | coding (893/1005 nt) | argC | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding | |||||
AATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTCACCCCACATCTGGGCAATTTCCCGCGCGGCAT > CP009273/4145353‑4145644 | aactaaaAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGa < 2:366552‑M1/146‑2 (MQ=255) cGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCAtt > 2:576786/1‑149 (MQ=255) cGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGAACAACGCCACCAGCGGCGTGAGCGGTGCGGGGCGTGAAGCGGCCAtt > 2:204663/1‑149 (MQ=255) aTTTCGGTGCCGGGCTGTTATCCGATGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGGGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattg < 1:225446‑M1/143‑16 (MQ=255) ttATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAg > 1:138720/1‑143 (MQ=255) ttATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGATGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAg > 1:66269/1‑143 (MQ=255) cGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttact > 1:226177‑M1/1‑106 (MQ=255) aCGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCGCCAGCGGCGTGAGCGGTGCAGGGCGagcatctgagtattgtggcggccgaagacaccttacgga > 1:146357‑M1/1‑104 (MQ=255) ggcACAGCTGGCGCTGAAACCGTTGCTTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATg < 2:331759/149‑1 (MQ=255) gcTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAACTTAGTCTGCAACCGTATGGCGTCTTTACTc < 2:329199/149‑1 (MQ=255) aCCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGGGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTc > 1:555278/1‑143 (MQ=255) ttgattgaTGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCg < 1:78229/143‑1 (MQ=255) ttgattgaTGCCGATCTTCTTGAACTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGCTAGACTGCAACCGGCAGGCGTCTTTACTCATCg > 1:481066/1‑143 (MQ=255) attgatGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcg > 1:44287‑M1/1‑74 (MQ=255) tGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgccaatattcgt > 2:431821‑M1/1‑69 (MQ=255) tGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACACCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAgaga > 2:457592/1‑149 (MQ=255) gCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgccaatattcgtt > 2:354237‑M1/1‑68 (MQ=255) ccGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTAATCGCCATTAACCa > 1:81676/1‑143 (MQ=255) tcttctTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCca < 2:180641/149‑1 (MQ=255) ttcgttaCCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATc < 1:263290/137‑1 (MQ=255) gcgcaacGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgccaatatgcgtttcggctatgcggaaacgcagtctctt < 1:67527‑M1/140‑108 (MQ=255) gATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagaccacttactgcaaggcgcggcggcacaagcgttacagttcgccaatattcgtttcggctatgcggaaacgcagtctctt < 1:114174‑M1/143‑108 (MQ=255) aCGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTc > 1:470380/1‑143 (MQ=255) cGCCACCAGCGTCGTCAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCCTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTCa < 1:520630/143‑1 (MQ=255) ccaccaGCGGCGTGAGCGGTGCAGGGCGagcatccgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacgagcggtacagtgcgccaatattcgtttcgggtatacggaaacgcagtctcttctgtaagt > 1:99779‑M1/1‑28 (MQ=255) caccaTCGGCGTGAGCGGTGCAGGGCGTAAAGCTGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTCAccc < 1:430893/143‑1 (MQ=255) caGCGGCGTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgcccatattcgtttcggctatgcggaaacgcagtctcttatttaagggtgc > 1:241520‑M1/1‑24 (MQ=255) aGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTCACCCcaca > 1:489482/1‑143 (MQ=255) gcggcgTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgccaatattcgtttcggctatgcggaaacgccgtctcttatttaaggatgcaatgatga > 2:556003‑M1/1‑22 (MQ=255) gcggcgTGAGCGGTGCAGGGCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgccaatattcgtttcggctatgcggaaacgcagtctcttatttaagggtgcaatgatga > 2:229029‑M1/1‑22 (MQ=255) cGGTGCAGGGCGTAAAGCGGCAAGTTCAAAAAGCTTTTGTTGAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTCACCCCACATCTGGGCAAtt > 1:192424/1‑143 (MQ=255) gggCGagcatctgattattgtggcgaccgaagacaacttactgaaaggcgcggcggcacaagcggtacagtgcgccaatattcgtttcggctatgcggaaacgcagtctcttatttaagggtgcaatgatgaatccattaattatcaaa < 2:6240‑M1/149‑145 (MQ=255) | AATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAACCGTTGATTGATGCCGATCTTCTTGACCTCAATCAGTGGCCGGTGATCAACGCCACCAGCGGCGTGAGCGGTGCAGGGCGTAAAGCGGCCATTTCAAACAGCTTTTGTGAAGTTAGCCTGCAACCGTATGGCGTCTTTACTCATCGCCATCAACCAGAGATCGCCACACACCTCGGTGCTGACGTTATCTTCACCCCACATCTGGGCAATTTCCCGCGCGGCAT > CP009273/4145353‑4145644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |