New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	58 (1.680)	42/270	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGC  >  CP009273/360138‑360430                                                                                                                                                     |                                                                                                                                                  CCACCCGCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAAtt                                                                                                                                                   <  2:537662‑M2/149‑1 (MQ=255)             ccGTTGCTTCGCACCGTTCAAATCCGCTCCCGGCGCATTTGTGCTACTCAGGGGAGCGTTCACCGACAAACAACAGATAAAACGCAAGGCCCCGTCTTTCGACTCAGCCTTTNGTTTTATTTGATGCCTGgggaattaggaac                                                                                                                                             >  1:32592/1‑142 (MQ=11)               gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCtt                                                                                                                                     <  2:592624/149‑1 (MQ=255)                ttGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                    <  2:109742/149‑1 (MQ=255)                gtGCCTCGCAACGTTCAAATCCCCTCCCGGCGGATTTGTCCTACCCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                    <  2:37114/148‑1 (MQ=255)                    ttCGCAACGTTCAAACCCGCCCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt                                                                                                                                      <  1:36365/143‑1 (MQ=255)                      cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                    <  1:337774/143‑1 (MQ=255)                      cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                    <  1:448844/143‑1 (MQ=255)                              tCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaa                                                                                                                            <  1:66012/143‑1 (MQ=255)                                aaaTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAg                                                                                                                          >  1:73160/1‑143 (MQ=255)                                       cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGAAGAAAGGGCCTCg                                                                                                                   >  1:240620/1‑143 (MQ=255)                                        tCCCGGCGGATTTGTCCTCCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg                                                                                                            <  2:556007/149‑1 (MQ=255)                                          ccGGCGGATCTGTCCTACTCCGGGGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGcc                                                                                                          <  2:162501/149‑1 (MQ=255)                                                 aTTTGTCCGACTCAGGACAGCGTTCACCGACAAACAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGTAATTAACTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAttttt                                                                                                   <  2:404104/149‑1 (MQ=21)                                                   ttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCGGGGGAATTGGGAGTTAATTCTTGAAGACGAAAGGGCCGCGTGATACGCCTAt                                                                                                       >  1:26380/1‑143 (MQ=255)                                                          aCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTTATACGCCTATTTTtata                                                                                                <  1:407711/143‑1 (MQ=255)                                                                gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCAt                                                                                   <  2:636457/149‑1 (MQ=255)                                                                    gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATTCCTGGGGAATTTGTAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGa                                                                               <  2:333829/149‑1 (MQ=255)                                                                      gTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCAt                                                                                   <  1:243887/143‑1 (MQ=255)                                                                        tCACCGACAAACAACAGATAAAACGACAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAAGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGAt                                                                           >  2:336429/1‑149 (MQ=255)                                                                         cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCCTggg                                                                                >  1:91786/1‑143 (MQ=255)                                                                           ccgacaccaacacgATAACACGAATGTCCGTGTCTTTCGACTTTGCCTGTCGTTTTACTTTATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGaa                                                                              <  1:392098/130‑1 (MQ=255)                                                                             cccaggcatcaaaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGc                                                                      >  2:491364/13‑149 (MQ=25)                                                                                            aaaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGc                                                             >  1:456179/1‑143 (MQ=255)                                                                                             aaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCt                                                            >  1:53775/1‑143 (MQ=255)                                                                                             aaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCAc                                                      >  2:547410/1‑149 (MQ=255)                                                                                                gAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTc                                                         >  1:55566/1‑143 (MQ=255)                                                                                                     gCCCAGGCTTGCGACTGCGCCTTTCGTTTTATTTGATGCCCGGTGAAGTGGGAATTAATTCTTGAAGACGAAAGGGCCACGTGCTGCCCCTATTTATATAGCGGTAA‑GTCATGGGTAGATCCAGCCGACCGGGCTTTCCACGCCCGCGt                                              <  2:467361/149‑1 (MQ=255)                                                                                                                 gACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGcc                                        >  1:561365/1‑142 (MQ=255)                                                                                                                      aGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCGATGTCGTTc                             >  2:102112/1‑149 (MQ=255)                                                                                                                         cTTTCGTGTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                          <  2:272704/149‑1 (MQ=255)                                                                                                                          tttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCGGCGTGCCGCTCCCTGTCgc                               >  1:33469/1‑142 (MQ=255)                                                                                                                          tttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGt                               >  1:411678/1‑143 (MQ=255)                                                                                                                            tCGTTTTATTGGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                       <  2:193911/149‑1 (MQ=255)                                                                                                                            tCGTTTTATGTGATGCCTGGGGACTTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                       <  2:194017/149‑1 (MQ=255)                                                                                                                               ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                    >  2:28990/1‑149 (MQ=255)                                                                                                                               ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACAAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                    >  2:566302/1‑149 (MQ=255)                                                                                                                                  tATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                       <  1:567356/143‑1 (MQ=255)                                                                                                                                    tttGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAGGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGATTTCCAGGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGtt                     >  1:130744/1‑143 (MQ=255)                                                                                                                                    tttGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGtt                     >  1:4917/1‑143 (MQ=255)                                                                                                                                     ttGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGaa              <  2:525087/149‑1 (MQ=255)                                                                                                                                       gATGCCTGGGGAATGGGGAATTAATTCTTGAAGATGGAAGGGCGTCGTGATACGCTTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCTGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtctc                  <  1:102008/143‑1 (MQ=255)                                                                                                                                                 gaattgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCcgc  <  2:62546/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAG‑GTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGC  >  CP009273/360138‑360430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.