| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | 36.4% | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 9 (0.260) | 8/270 | NT | 29.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 21 (0.630) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 15 (0.430) | 14/270 | NT | 40.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 21 (0.630) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
TGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCT > CP009273/2400109‑2400399 | aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctagaacgaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc > 2:600400‑M2/149‑149 (MQ=255) aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt < 2:634123‑M2/2‑1 (MQ=255) aactggcgataacgccttaaatggcgaagaaacggtctaaataggctcattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCtag < 2:378257‑M2/4‑2 (MQ=255) actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 2:174346‑M2/5‑1 (MQ=255) tggggataacgccttaaatggcgaagaaccggtctaaataggctgatccaaggcatttacgggagaaaaaaacggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttacccgcgtattcgcaccttccc > 1:243812‑M2/143‑143 (MQ=255) tggggataacgccttaaatcgcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatgcgcaccttccc > 1:386235‑M2/143‑143 (MQ=255) ggggataacgcctcaactggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacaggaagaaaggaaattactgagtcagccgagaagaatttccccgcttattcgcaccttccCt < 1:113083‑M2/2‑1 (MQ=255) gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgcgaagaatttccccgcttattcgcacattccCTa > 1:551897‑M2/141‑143 (MQ=255) ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcgCTaa < 1:236402‑M2/4‑1 (MQ=255) ggataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:118617‑M2/4‑1 (MQ=255) gngaacgccgtaagtggcgaagaaacggtgtaaataggctgattcaaggcatttacgggagaaaaaagcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatctccccgcttattcgcaccttccCTaaa < 1:476778‑M2/5‑1 (MQ=255) tatatTATCACTGACTGGCGGCTCAGTCTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaaa < 1:414678/143‑1 (MQ=255) tatgatCACTGACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATGCGGAACCCGGACGAAAGTAAAGATGCATATGAGTTGCACTaaaaaa < 1:21358/143‑1 (MQ=255) aacgccttaaatggcgaagaaacggtctaaataggctgattaaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagcagagaagactttccccgcttattcgcaccttacctagtttt > 1:412969‑M2/136‑138 (MQ=255) attatCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTTCACTAAAAAAGCGACTc > 2:74873/1‑149 (MQ=255) acgccttaaatggcgaagaaaccggctaaataggcttattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAg < 1:264746‑M2/9‑1 (MQ=255) cgccttaaatggcgaagaaacggactaaataggctgattcaaggcaaaaaagagaaaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGc < 1:35552‑M2/10‑1 (MQ=255) tCACTTACGGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaa > 2:180675‑M2/1‑134 (MQ=255) cACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGATTTGCACTAAAAAAGCGACTCACAtt < 2:381239/149‑1 (MQ=255) taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaacaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaacaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTg < 2:357345‑M2/21‑1 (MQ=255) aCTTACTGGCGGCTCATACGGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGAAAAAAAAAAGCGACTc < 1:577640/143‑1 (MQ=255) ccagctcagtatGAGCCGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTACACTAAAAAAGCGACTCACAGTGTTCCGttc > 2:353643/12‑148 (MQ=255) tgcttctACTGAGCTGGTTAATGCTGTGCACACACAAACAAGTAATTCCTTTTGTAATGTGCCTTCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTtata < 2:10880/143‑1 (MQ=255) ggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatg < 2:565979‑M2/149‑28 (MQ=255) aTACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGcc > 2:629126/1‑149 (MQ=255) ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagccagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTtata > 1:269042‑M2/113‑143 (MQ=255) gAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagat > 1:82744‑M2/1‑112 (MQ=255) aaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGt < 2:553339‑M2/42‑1 (MQ=255) gCACACACCAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:152363‑M2/1‑95 (MQ=255) cacacacaAGCTAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 2:347778‑M2/1‑94 (MQ=255) cacacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 2:347807‑M2/1‑94 (MQ=255) acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAATTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACGAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga < 2:528057‑M2/149‑57 (MQ=255) cacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:359954/1‑143 (MQ=255) aaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatatcact > 1:59005/1‑139 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:393563‑M2/79‑143 (MQ=255) aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 1:510396‑M2/1‑79 (MQ=255) aTTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgaggacaggtttggcagctggagccatagaacagggttcatcat < 1:400759‑M2/143‑71 (MQ=255) ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccgtagaacagggttcatcatga < 1:369394‑M2/143‑73 (MQ=255) acgggcgcccctgggagttTCATCCGGAACCCGGACGAAAGGAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctggagccatagaacagggttcatcatgagtcat > 1:458089‑M2/9‑66 (MQ=255) tCCCTGGCCGTGTCATCCGGAACCCGAACGAAAGTAAAAATGAAGATAAGTAGCAATAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCTCCCAATCGATCTTCAGGGATCGCATATCTATTAAGTTcct < 1:376632/143‑1 (MQ=255) tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCAATTAAGTTACTCActct > 2:603487/1‑149 (MQ=255) ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATACTGCCTGAAGTAGATCAAAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt < 2:91428/149‑1 (MQ=255) cTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg < 2:43774‑M2/149‑94 (MQ=255) tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGCATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc > 1:174331/1‑143 (MQ=255) ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcgtctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa > 2:423667‑M2/1‑48 (MQ=255) aTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGAc < 2:359833/149‑1 (MQ=255) ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgccaactattccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaaagtgaattcagca > 2:435642‑M2/1‑41 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATg < 1:164426‑M2/106‑1 (MQ=255) cccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgt < 2:612510/149‑1 (MQ=255) ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATg > 1:324383/1‑143 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgc < 1:569743/143‑1 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtgt > 2:374116/1‑149 (MQ=255) cGAAAGTAAAAATGCATCTGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAACGCCTGAAGTAGATCACAGAATATATCTTCAGGGATAGCATATCTATTAAGTTACTCACTGTTTTCTATTTATGACATGCGCgt > 1:421359/1‑143 (MQ=255) gAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt > 2:128739‑M2/1‑30 (MQ=255) atcagataattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGGCTTTGt > 1:444539‑M2/22‑143 (MQ=255) aaaTGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGGGTTTGTAtaaatgta > 2:83081/1‑149 (MQ=255) ttagtcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGTATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat < 2:610218‑M2/134‑1 (MQ=255) tGCCTATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 1:312780/143‑1 (MQ=255) cATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTCCAGGGATCGCATATCTATTAAGTTACTCACTCTTATCTCTTATGGACTTGCGCGTGTTTGCATaaatgtaaatgt < 2:470135/149‑1 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgcgtcatcaacttaccttcgccgacagagaattcagcagtaagcgccgtcagaccagaaaagagattt < 1:308739‑M2/143‑139 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaacgaggtttt < 1:154603‑M2/143‑140 (MQ=255) | TGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCT > CP009273/2400109‑2400399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |