New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	112 (2.040)	73/292	0.0	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTT  >  CP009273/360142‑360433                                                                                                                                                  |                                                                                                                                                    ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAA‑ACCAAACGCGAAGGAAGGGCCCAGTCCTTCCACTAAGCCTTTCGTCTGATTGGATGCCTGgggaattgggg                                                                                                                                                 >  1:446549/1‑148 (MQ=11)   tCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg                                                                                                                                                    >  2:131612/1‑144 (MQ=35)   tCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGCTTTATTTGATGCCTGggaaattgggaat                                                                                                                                               >  1:626525/1‑149 (MQ=255)     cGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaatta                                                                                                                                             >  1:581004/1‑149 (MQ=40)         ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGCCTGAGCCTTTCGTGTTATTTGATGCCTGGGGAATTGGGAATTAATTc                                                                                                                                         <  1:598881/149‑1 (MQ=255)           gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCtt                                                                                                                                       <  1:167502/149‑1 (MQ=255)              gCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGACTGGGGAATTGGGAAGTAATTc                                                                                                                                         >  2:706118/1‑144 (MQ=255)                 tcccAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCCCTCCTCTCAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                      <  2:777313/141‑1 (MQ=14)                 tCGCAACGTTCATTTTCGCTTGCGGCGGATTTGTCCTAGTCCGGAGCGCGTTTGTCGACTCTCAACCTA‑TAAGACGATAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATCTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                      <  2:619038/144‑1 (MQ=9)                  cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAGTACTTGa                                                                                                                                     <  2:423952/144‑1 (MQ=255)                   gccgcgctcccgaccGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa                                                                                                                                    <  2:155433/131‑1 (MQ=255)                   gCAACGTTCAATTCCGCTCCCGGCGGATTTGACCGACACAGGAGAGCGTTCCCAGACAAACTACCGA‑TAAAACGAAAGGCCCAGTTTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa                                                                                                                                    <  2:375268/144‑1 (MQ=17)                        gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAggg                                                                                                                          >  1:897909/1‑149 (MQ=255)                          tCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa                                                                                                                             <  2:545453/144‑1 (MQ=255)                          tCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGGTCACCGACAAACAACAGA‑TAAAGCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTGTTATTTGATGCCTGGGGAATTGGGAATTACTTCTTGAAGACGAAAGGGcc                                                                                                                        >  1:838020/1‑149 (MQ=255)                                   cccccGGCGGATTTGGCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAc                                                                                                               <  1:669677/147‑1 (MQ=255)                                   cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt                                                                                                                    <  2:154557/144‑1 (MQ=255)                                   cTCCCGGCGCATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAc                                                                                                               <  1:374954/149‑1 (MQ=255)                                    tCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg                                                                                                              >  1:377536/1‑149 (MQ=255)                                           ggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAttt                                                                                                       <  1:88627/149‑1 (MQ=255)                                           ggATCTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTCCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAttt                                                                                                       <  1:430490/149‑1 (MQ=255)                                                  tCCTACTCAGGCGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGTGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAttttt                                                                                                     <  2:720800/144‑1 (MQ=255)                                                        tCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATg                                                                                          >  1:562662/1‑149 (MQ=255)                                                          aGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGACAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                             >  2:343203/1‑144 (MQ=255)                                                                gCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGa                                                                                  <  1:859004/149‑1 (MQ=255)                                                                      aCCGACAAACAACAGA‑TAATACTAAAGGCCCAGTCTTTCGACGGAGCCTTTCGTTTGAGTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTCTAGGTTAATGTCATGGGaa                                                                                 <  2:657976/144‑1 (MQ=255)                                                                         gACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGAt                                                                              <  2:289860/144‑1 (MQ=255)                                                                         gACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAAGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCCTGGGAAGATCCAGc                                                                         >  1:31047/1‑149 (MQ=255)                                                                          acaaacaaCAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATc                                                                             <  2:206637/144‑1 (MQ=255)                                                                           caaacaaCAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCg                                                                       >  1:238845/1‑149 (MQ=255)                                                                              cccacaGA‑TAAAACCAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTGTATTTGATGCCTGGGGAATTTGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGc                                                                         <  2:166782/141‑1 (MQ=255)                                                                               caacaGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCCTGGGAAGATCCAGcc                                                                        >  2:230936/1‑144 (MQ=255)                                                                               caacaGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTCATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGcc                                                                        <  2:71761/144‑1 (MQ=255)                                                                                 acaGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAgg                                                                 >  1:252485/1‑149 (MQ=255)                                                                                         aaaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGGTCCAGCCGACCAGGCTTTCCa                                                          >  1:148220/1‑149 (MQ=255)                                                                                         aaaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGGTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGGTACGCCTATTTTTCTAGGGTAATGTGATGGGAAGATCAGGACGACCAGGCTTTCCa                                                          >  1:148486/1‑149 (MQ=37)                                                                                          atccaaaGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCtt                                                              <  2:166185/140‑1 (MQ=255)                                                                                          aaCGAAAGGCCCAGTCTTTTGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCtt                                                              <  2:460928/144‑1 (MQ=255)                                                                                           aCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCttt                                                             <  2:666559/144‑1 (MQ=255)                                                                                            cGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGc                                                       <  1:325220/149‑1 (MQ=255)                                                                                              aaaGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGccc                                                     <  1:228398/149‑1 (MQ=255)                                                                                                       gTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGc                                            >  1:352155/1‑149 (MQ=255)                                                                                                        tCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                                <  2:525582/144‑1 (MQ=255)                                                                                                        tCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                                <  2:727939/144‑1 (MQ=255)                                                                                                         cTTTCGACGGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGc                                               <  2:197881/144‑1 (MQ=255)                                                                                                          tttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGCATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTccc                                              >  2:281065/1‑144 (MQ=255)                                                                                                               aCTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATTGGTTAATTTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTcc                                         >  2:726392/1‑144 (MQ=255)                                                                                                               aCTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATGGGGAATTAATTCTTGAAGACGGAAGGGCCTCGTGATACGCCTGTTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTcc                                         >  2:52132/1‑144 (MQ=255)                                                                                                                    gCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATggc                                    >  2:219096/1‑142 (MQ=255)                                                                                                                        ttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcgcg                           <  1:556871/149‑1 (MQ=255)                                                                                                                            ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGGAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTGGCGCGGTtc                       >  1:731772/1‑149 (MQ=255)                                                                                                                              ttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                          <  2:826385/144‑1 (MQ=255)                                                                                                                                 tttGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                       >  2:778632/1‑144 (MQ=255)                                                                                                                                          tGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGATATCGGAAAcg              >  2:636651/1‑144 (MQ=255)                                                                                                                                           ggggAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAAcgc             <  2:715107/144‑1 (MQ=255)                                                                                                                                            gggaattgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAAcgcg            <  2:269217/144‑1 (MQ=255)                                                                                                                                               aattgagaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGCAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCCTTCGCGCGGTTCTCGGAAACGCGCTg         >  2:800294/1‑144 (MQ=255)                                                                                                                                                 ttgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGtt  <  1:331659/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGA‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTT  >  CP009273/360142‑360433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.