| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4161535 | 74 (0.630) | 23 (0.200) | 8/280 | 14.4 | 24.5% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202950 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATG > CP009273/4161404‑4161639 | tAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGACCGcttctgcgttctga < 2:1920797/149‑14 (MQ=1) aGGCCGGGTGTGTAAGCGCAGCGATGCGTTGCGCTAAGCGGGACGAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGACCGcttctgcgttctgat < 2:863437/149‑15 (MQ=1) ggaggCGTTGAGCCAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg < 2:288964/145‑1 (MQ=1) ttGACCTAACCGGTACTAATGCACCGTGAGGCTTAACCTTACAACCCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATGTTCAGCCTGATACAGATTCAATCAGAACTCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCa < 1:1471693/144‑1 (MQ=11) aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTa < 1:1727612/144‑1 (MQ=32) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGGTGAGAGAAG‑ATTTTCCGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACCGCATTTGCATGGCGGCAGTAgcg > 1:255603/1‑144 (MQ=11) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGTTACTGATTAAATCAGAACGCAGAAGCGGTCTGCTACCACCGAACTTGTCTGGCGGCAGTAgcg < 1:391493/144‑1 (MQ=11) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg < 2:1796644/149‑1 (MQ=32) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg > 2:1654268/1‑149 (MQ=32) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCGGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGACGCAGTAgcg > 1:255492/1‑144 (MQ=12) aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtggt < 2:817400/149‑1 (MQ=32) aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtggt > 2:110985/1‑149 (MQ=32) ccGGTACTAATGAACCGTGAGGCTTAACCTTACACCGCCGACGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGAGTAAATCAGAACGCAGAAGCGGTCTGATAACACAGAATTTGCCTGGCGGCACTAGCGCGGGGGTc > 2:1720783/1‑149 (MQ=11) ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCgg > 1:328347/1‑144 (MQ=32) ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCgg > 1:282104/1‑144 (MQ=32) cGGTACTACTGAACCGTGAGGCCTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc < 2:1267967/149‑1 (MQ=17) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAACTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt < 1:1675431/144‑1 (MQ=17) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCCGTCTGATAAAAGAGAATTTGCCTGCCGGCAGGAGCGCggc > 1:740802/1‑143 (MQ=255) gggaCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg < 1:1738136/141‑1 (MQ=17) ggTACTAAGGAACCGTGAGACTTAACCTTACAACGCCGAAGCTGTTTTGGCGGCT‑ACACACGAAGTGGCAGCAAGATACAAGGGAAATCAGAACGCAGAAGCGGTGTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGGccc > 2:1452876/1‑149 (MQ=2) tACTAATGAACCGTGGCGCTTAACCTTACAACGCCGCAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtggt < 1:474407/144‑1 (MQ=12) tACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGCACGACGCAGGGCCCGTATAAAACCGCATTTGCCTGACGGCAGTAGCGCGGTGGGCCCAc > 2:56762/1‑149 (MQ=11) tACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtggt < 1:203823/144‑1 (MQ=32) tACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc < 2:258826/149‑1 (MQ=32) tACTAAGGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACACAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc < 2:974007/149‑1 (MQ=17) cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCGGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc < 1:1326081/144‑1 (MQ=17) cTAAGGAACCGTGAGGATTAACCTTACGACGCCGAAGCTGTTTTGGGCGTTGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACTCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc < 1:997438/144‑1 (MQ=11) tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGGGGTCCCCCCTg > 2:836233/1‑149 (MQ=17) tAATGAACCGTGAGGCGTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTg > 2:1252014/1‑149 (MQ=17) aTGAACCGTGAGGCTTAATCTTACAAGGCCGAAGATGATTGGGCGGATGCGAGGAG‑GTTTTCAGCCTAATACATAATAAATCAGAACGTAGAAGCGGTCGGATAAAACAGATTTTGCCTGGCGGCAGTAGCGCGGTGGTACCAc < 1:614451/144‑1 (MQ=11) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCGGAACGCAGAAGCGGTCTGATAAAACGGAATTTGCCTGGCGGCAGTAGCGCGGTGGTGCCAc > 1:111953/1‑144 (MQ=12) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAACACAGAATTTGCCTGGCGGCAGTCGCGCGGTGGTCCCACCTGAc > 2:485838/1‑149 (MQ=17) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc > 1:1819976/1‑144 (MQ=32) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc < 1:19118/144‑1 (MQ=32) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAc < 2:1428301/149‑1 (MQ=32) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAcc > 1:1002620/1‑144 (MQ=32) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAcc > 2:1298222/1‑149 (MQ=32) gacccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc < 2:1185098/146‑1 (MQ=17) aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAcccc > 2:858736/1‑149 (MQ=32) ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAt < 2:515568/149‑1 (MQ=32) cGTGATGCTTAACCTTACAACGCCGAAGCTGTTTTGGGGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATg < 2:3103/149‑1 (MQ=17) cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGGGGTCCCACCTGAcc > 1:937159/1‑144 (MQ=17) gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGc < 2:343652/149‑1 (MQ=32) gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCa < 1:1312347/144‑1 (MQ=17) aGGCTTAACGTTACAACGCCGAAGGTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAt < 1:1795293/144‑1 (MQ=14) aGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAt > 1:1636330/1‑144 (MQ=32) aaCCTTGCAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg < 2:404142/149‑1 (MQ=17) cTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc > 1:1477648/1‑144 (MQ=32) ttACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCGACCTGACCCCATGCCGAACTCa > 1:1539290/1‑144 (MQ=17) tACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg < 1:1798479/144‑1 (MQ=32) aCAAGGCCGAAGCTGTAGTGTGGGATGAGAGGAT‑ATTTTCAGCCTGATACCGACTATATTAGAACGCAGGTGCGGTCTGTTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGa < 1:565810/144‑1 (MQ=11) cAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa < 1:1803440/144‑1 (MQ=32) aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAGCTCAGAAGTGaac > 2:722148/1‑148 (MQ=17) aaCGCCGAAGCCGTTATGGAGGATGAGAGAAG‑ATTTTCAGCCTAATACAGAGTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa < 2:700532/149‑1 (MQ=11) aCGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc > 2:561932/1‑149 (MQ=32) cGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGTCTGATACAGATGAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTg < 1:148283/144‑1 (MQ=17) gCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa < 1:549570/144‑1 (MQ=32) gCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa > 1:1795743/1‑144 (MQ=32) gCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATCCCCAACCCAGAAGTGa > 1:548302/1‑144 (MQ=12) ccGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCGCACCTGACCCCATGCCGAACTCAGAAGTGac < 1:1340060/144‑2 (MQ=17) ccGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGcc < 2:1294428/149‑1 (MQ=32) cGAAGCTGTTGTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCg < 2:1507514/149‑1 (MQ=17) aaGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGATGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACg > 1:1460756/1‑144 (MQ=17) cTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCg < 1:601169/144‑1 (MQ=32) cgcgtgggCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGt > 1:226499/7‑144 (MQ=17) gTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa < 1:1038277/144‑1 (MQ=32) gTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc < 2:1789750/149‑1 (MQ=32) ttttGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCg > 2:1359073/1‑149 (MQ=32) ttttGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCg > 2:1293141/1‑149 (MQ=32) tttGGCGGAGGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGa < 2:1234315/149‑1 (MQ=17) ttGGTGGATGATGGGAG‑ATTTTGTGCCTGATACAGATTAAATCAGAACGCAGAAGCTGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAt < 2:361786/149‑1 (MQ=11) ttGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGACCTCAGAAGGGAAACGCCGTAgcg > 1:1669608/1‑144 (MQ=17) ggCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGcc > 1:435752/1‑144 (MQ=32) cGGATGAGAGAAG‑ATTCTCAGCCTGCTACAGATCACATCAGACCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGCACCACATGACTCCTTGCCGAACTCAGAAGTGAACCGCCGTAGCGCCGa < 1:523372/144‑1 (MQ=11) gATGAGAGAAG‑CTTCTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAACTGCCCAGATCCCGAACTCAGAAGCCAAACGCCGTAGCGCCGATg < 1:1684333/144‑1 (MQ=11) gATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATg > 1:249836/1‑144 (MQ=31) | TAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAG‑ATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATG > CP009273/4161404‑4161639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |