Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 3,178,254 IS5 (+) +4 bp 28.4% coding (56‑59/291 nt) yqiC → BMFP family putative fusogenic protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2282398 =NA (NA)14 (0.200) 11/274 NT 25.8% noncoding (1195/1195 nt) IS5 repeat region
?CP009273 3178254 = 39 (0.580)coding (56/291 nt) yqiC BMFP family putative fusogenic protein
* ? CP009273 = 2283592NA (NA)17 (0.240) 14/276 NT 29.7% noncoding (1/1195 nt) IS5 repeat region
?CP009273 = 3178257 39 (0.570)coding (59/291 nt) yqiC BMFP family putative fusogenic protein

ATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  CP009273/2282253‑2282539
                                                                                                                                                 |                                                                                                                                             
gttCTTTTATATCCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaa                                                                                                                                            <  1:392389/148‑1 (MQ=255)
    ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGAGATCTTTTTCCAGGACAACACCATCAACTGTCTCCCCCTGATCAAAAGCTGGGGGCACGGCTATGGGCGACTATAAGGAAGGTg                                                                                                                                        >  1:1152957/1‑149 (MQ=255)
     tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTCTGGGTGAATATAAGGAAGGtct                                                                                                                                       >  1:522072/1‑147 (MQ=255)
     tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGc                                                                                                                                       <  1:1238238/149‑1 (MQ=255)
     tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGc                                                                                                                                       >  1:571480/1‑149 (MQ=255)
     tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGc                                                                                                                                       <  1:798660/149‑1 (MQ=255)
         tatGCTGTTCTACGCCAGGATTGATTATCGGATTATTGTAGGTCCCATAAACCAACTGGATATCGTTTTCTAGGAAAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGTGAATATAAGTAAGGGGCGAAt                                                                                                                                   >  2:376914/1‑149 (MQ=255)
                  ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAAAGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGa                                                                                                                          >  2:20819/1‑149 (MQ=255)
                      gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                      <  2:1101065/149‑1 (MQ=255)
                       ccAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                     <  1:556569/149‑1 (MQ=255)
                         aGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                                   <  1:988380/149‑1 (MQ=255)
                           gattgattTTCGTATTATTGGCGGTCACATAGATCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                                                                 >  2:578132/1‑149 (MQ=255)
                                       tattatGGGCGGTCCCATCAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGCGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                                                                     <  1:279468/149‑1 (MQ=255)
                                                       aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTCTGGGTGAATATAAGGGAGGTGCGAATAAGCGGGGGCATTCTTCTCGGCTGACTCCGTCCTTTCATttcttct                                                                                     >  2:651175/1‑148 (MQ=255)
                                                              aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTCCATGTTTGa                                                                              <  1:328723/149‑1 (MQ=255)
                                                                    atatCTTTTTCCAGGAAAACACCATCAACTGTTCCACCATACTCAACAGTTGATGCCAATGCTTTGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                        <  2:700747/149‑1 (MQ=255)
                                                                             tCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                                                               <  1:313687/149‑1 (MQ=255)
                                                                                aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGGGCCGATTTTTTTTCCCGt                                                            >  2:24723/1‑149 (MQ=255)
                                                                                aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAGGAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGGGCCGATTGTTTCTCCCGt                                                            >  2:316564/1‑149 (MQ=255)
                                                                                      acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                                      >  2:956495/1‑149 (MQ=255)
                                                                                         ccATCCGCTGTCTCACCATACGCAACAGTTGACGCCAATGCTATTGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                   <  2:561523/149‑1 (MQ=18)
                                                                                           aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                                 <  1:1085580/149‑1 (MQ=255)
                                                                                            tCAACTGTCTCACCACACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                                <  1:561598/149‑1 (MQ=255)
                                                                                             taaCTGTGTCACCATACGTCACTGTTGTTGCGAATGCTACGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTTTTCTGGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                               <  2:2443/148‑1 (MQ=17)
                                                                                              aaCTGTCTCACCATACTCCCCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATCTTTTCTCCCGTAAATGCCTTGAAta                                              >  1:910668/1‑148 (MQ=255)
                                                                                               aCTGTCTCACCATACTCAACAGTTGCTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCCATTTTTTCTCCCGTAAATGCCTTGAATCa                                             <  1:759572/149‑1 (MQ=255)
                                                                                                gtGTCCCACCAGACTCAACGGGTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                            <  2:722326/148‑1 (MQ=255)
                                                                                                ctggcccaacATACGCAACAGTTGATGCCAATGCTATGGGTGAATACAAGGAAGGTGCGAATAAGCGGGCAAATTCTTCTCGGCTGACTCAGTCATTTGATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                            <  2:317859/140‑1 (MQ=17)
                                                                                                cTGTCTCACCCTACTCAACCGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                            <  2:415079/149‑1 (MQ=255)
                                                                                                 tgcttcACCATACTCAACTGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGCGCTAATAAGCTGTGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                           <  2:369262/145‑1 (MQ=18)
                                                                                                 tGTCTCACCATCCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                           <  1:578132/149‑1 (MQ=255)
                                                                                                       aCCATACTCAACAGTTGATGCCAATGCTATCGTTGTATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTGTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt                                     >  2:575694/1‑149 (MQ=255)
                                                                                                              tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTGATGTTTGAGCCGATTTTTTCTCGTGTAAAGGCCTTGAATCAGCCTATGTCGCCCGt                              >  1:708783/1‑149 (MQ=17)
                                                                                                                  cAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                          >  2:285668/1‑149 (MQ=255)
                                                                                                                  cAGTTGATGCCAATGCTATGGGTGAAGATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                          >  2:293424/1‑149 (MQ=255)
                                                                                                                    gTTGCTGCCAATGCTATGGGTGAATATAAGGCAGGTGCGAATCAGCTGGTAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGTCTTGAATCCGCCTATTTAGACCGTttcttc                        <  1:648351/149‑1 (MQ=17)
                                                                                                                     ttGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                       >  1:849311/1‑149 (MQ=255)
                                                                                                                        aTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTCTTTAGAGCGTTTCTTCGCCa                    >  1:430626/1‑149 (MQ=255)
                                                                                                                               tGCTATGGGTGACTATAAGGAAGGTGCGAATAAGCGGGGAAGTTCTTCTCGGCTGACTCAGTCGTTTACTTTCGTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAATCAGCCGCTGTTGACCGTTGCTTCGCCAGTTagac             >  2:1152903/1‑146 (MQ=14)
                                                                                                                                    tGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGTAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTa        <  1:1084130/149‑1 (MQ=38)
                                                                                                                                       gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGATGACTCAGGCGTGTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc     >  1:862349/1‑149 (MQ=255)
                                                                                                                                        tGAATATTAGTAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc    <  1:376914/149‑1 (MQ=16)
                                                                                                                                          aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTGTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGGTATCCCCa  <  1:48085/149‑1 (MQ=12)
                                                                                                                                          aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCa  >  1:509111/1‑149 (MQ=32)
                                                                                                                                                 |                                                                                                                                             
ATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA  >  CP009273/2282253‑2282539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.