Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 2,400,257 IS5 (+) +4 bp 31.3% intergenic (‑137/‑780) lrhA ← / → alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2282398 =NA (NA)18 (0.260) 16/276 NT 28.0% noncoding (1195/1195 nt) IS5 repeat region
?CP009273 2400257 = 45 (0.660)intergenic (‑137/‑783) lrhA/alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2
* ? CP009273 = 2283592NA (NA)23 (0.330) 14/276 NT 33.2% noncoding (1/1195 nt) IS5 repeat region
?CP009273 = 2400260 45 (0.660)intergenic (‑140/‑780) lrhA/alaA transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

Only 100 of 119 total aligned reads displayed.

TGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCC  >  CP009273/2400109‑2400405
                                                                                                                                                    |                                                                                                                                                    
aaaagctggggataacgccttaaatggcgcagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  1:1164222‑M2/1‑1 (MQ=255)
aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  2:21215‑M2/1‑1 (MQ=255)
aaaaactggggataacgcctgaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                      <  2:156103‑M2/1‑1 (MQ=255)
 aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                     >  1:515718‑M2/148‑149 (MQ=255)
 aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgctcactcgcacctcccCt                                                                                                                                                     >  2:239219‑M2/148‑149 (MQ=255)
 aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattaacggcatatacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaacttccccgcttattcgcaccttccCt                                                                                                                                                     >  1:758478‑M2/148‑149 (MQ=255)
  aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                                    >  2:1011502‑M2/147‑149 (MQ=255)
   aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcgaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   <  2:168136‑M2/4‑1 (MQ=255)
   aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCtag                                                                                                                                                   <  2:1111993‑M2/4‑2 (MQ=255)
   aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                   >  1:418666‑M2/146‑149 (MQ=255)
    acttgggataacgccttaaatggcgaagaaacggtctaaatagtctgattcaaggcatttacgggagaaaaaatctgctccaacatgacgacatgaaatcacttagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa                                                                                                                                                  <  2:203663‑M2/5‑1 (MQ=255)
    actggggataagcccttaaatggcgaagaaacggtctaaataggctggttcaagggacttacgggagaaaaaatcggctgcagcaggaagaaatgaaatgactgagtcagccgagaagaattaccccgcttattcgcacgttccccgat                                                                                                                                                  <  2:1073501‑M2/5‑5 (MQ=255)
    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa                                                                                                                                                  <  2:1130252‑M2/5‑1 (MQ=255)
    acgggggataacgccttaaatggcgaagaaacggtctaaagaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa                                                                                                                                                  <  2:8788‑M2/5‑1 (MQ=255)
    accggggataccgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa                                                                                                                                                  <  2:448209‑M2/5‑1 (MQ=255)
     ttATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaaa                                                                                                                                                 <  2:833143/149‑1 (MQ=255)
     ttATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaaa                                                                                                                                                 >  2:955481/1‑149 (MQ=255)
       aTCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaaaaaa                                                                                                                                               >  2:1046392/1‑149 (MQ=255)
        tcaaaaaataaaaCTTACTGGCGGCTCATACTGAGCAGGTTAATGGTGTGCACACACAAACAAGCAATTCCAATTGAAATGTGAATACATGGCAGTTTCATCCGGAAAAAAAAAAAAAAAAAAAATGCATATGAGTTGCACTAAAAAAg                                                                                                                                              <  2:975434/137‑1 (MQ=255)
        tCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAACCAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGGACTACAAAAg                                                                                                                                              >  1:709820/1‑149 (MQ=255)
          atatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg                                                                                                                                            <  1:686499/149‑1 (MQ=255)
           tatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAAGCCGGACGCACGTAAAAATGACTATGAGTTGCGCTAAggaaggtg                                                                                                                                           <  1:1184646‑M2/149‑9 (MQ=255)
           tatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGa                                                                                                                                           >  1:274542/1‑149 (MQ=255)
                 atCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTcaca                                                                                                                                     <  1:517733/149‑1 (MQ=255)
                  tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAt                                                                                                                                    >  1:392846/1‑149 (MQ=255)
                   ttaaatggccaagaaacggtctaaacaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccggttattcgcaccttccCTAAAAAAGCGACTCACAtt                                                                                                                                   <  1:490848‑M2/20‑1 (MQ=255)
                     cTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtc                                                                                                                                 <  1:1045272‑M2/149‑19 (MQ=255)
                          tGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGGGTTGCACTACAAAAGCGGCTCACATTGTTCCGt                                                                                                                            >  1:125527/1‑149 (MQ=255)
                          tGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGAAGAAAGTAAAAATGCATCTGAGTTGCACTAAAAAAGCGACACAGAtgctcccgg                                                                                                                            >  2:1125475/1‑141 (MQ=255)
                               gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATaa                                                                                                                       <  2:1216452‑M2/32‑1 (MQ=255)
                               gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATaa                                                                                                                       <  2:1103648‑M2/32‑1 (MQ=255)
                                cTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATGGTTCCGTTATAAt                                                                                                                      >  1:402542/1‑149 (MQ=255)
                                      tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATGGTTCCGTTATAATGCCTGa                                                                                                                >  1:186456‑M2/111‑149 (MQ=255)
                                      cTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                                <  1:949203‑M2/149‑36 (MQ=255)
                                       tGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa                                                                                                               >  1:1015730/1‑149 (MQ=255)
                                           cTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg                                                                                                           >  1:43944/1‑149 (MQ=255)
                                              gTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATc                                                                                                        >  1:707047/1‑149 (MQ=255)
                                                  aTGCTGTGCCCACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg                                                                                                    <  1:500536/149‑1 (MQ=255)
                                                   tGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgccaacaagtccctgatatgagatcatgtttgtcgtgtgga                                                                                                   <  1:327540‑M2/149‑49 (MQ=255)
                                                     cTGTGCACACACAAACAAGCAATGCCATTTGTAACGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAat                                                                                                 <  1:582792/149‑1 (MQ=255)
                                                       gtgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAACCCGCCACCCACATCGTTCCGTTATAATGCCTGAAGTAGATCACAGAacat                                                                                               >  2:871632/1‑149 (MQ=255)
                                                          gcatttacgggagaaacaaacggctaaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaactaccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc                                                                                            <  2:582335‑M2/59‑1 (MQ=255)
                                                             acacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTc                                                                                         >  1:956407/1‑149 (MQ=255)
                                                              cacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCa                                                                                        <  2:290018/149‑1 (MQ=255)
                                                                  aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggcaggccagaacaagtccctgctacgcgatcatgtttgtcatctggtgccatagaacagggt                                                                                    <  2:854329‑M2/149‑64 (MQ=255)
                                                                  aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                    <  1:1035451‑M2/149‑64 (MQ=255)
                                                                  aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtacgaacaactccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                    <  1:916032‑M2/149‑64 (MQ=255)
                                                                    gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATc                                                                                  >  1:881359‑M2/81‑149 (MQ=255)
                                                                    gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATc                                                                                  >  1:501182‑M2/81‑149 (MQ=255)
                                                                     acataacaccggcccaaacctgaagacattaaatgactgagtcagccgagaagactttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg                                                                                 <  2:658008‑M2/70‑1 (MQ=255)
                                                                      gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCCGGGATCGc                                                                                >  1:720883‑M2/79‑149 (MQ=255)
                                                                      aGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc                                                                                <  1:541917/149‑1 (MQ=255)
                                                                        aaaaatcggctcaaacatgaagaaatgacatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCat                                                                              >  1:663319‑M2/77‑149 (MQ=255)
                                                                           ttCCATTTGTAATGTGCCGCCCTGGCCGTTTCTGCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                           >  1:100361‑M2/1‑77 (MQ=255)
                                                                                  tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAg                                                                    >  2:1102344‑M2/67‑149 (MQ=255)
                                                                                  tGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAg                                                                    <  1:772182/149‑1 (MQ=255)
                                                                                     aaTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGAACTAAAACAGCGACTCACATTGTCCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTa                                                                 <  2:511896/149‑1 (MQ=255)
                                                                                        gtgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactc                                                              <  1:1046392/149‑1 (MQ=255)
                                                                                         tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactca                                                             <  2:379402/149‑1 (MQ=255)
                                                                                          gCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac                                                            <  1:671115/149‑1 (MQ=255)
                                                                                          gCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac                                                            >  2:1161967/1‑149 (MQ=255)
                                                                                           aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcact                                                           >  1:816814‑M2/58‑149 (MQ=255)
                                                                                            cTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                          >  2:949203‑M2/1‑60 (MQ=255)
                                                                                             tCCCTGGCAGTTGCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGCCTCACATTGTTCCGTTATAATGCCTTAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCActct                                                         <  1:733478/149‑1 (MQ=255)
                                                                                               ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt                                                       <  2:274542/149‑1 (MQ=255)
                                                                                                caggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATATATTAAGTTACTCACTCtttt                                                      >  2:889091/3‑149 (MQ=255)
                                                                                                   gCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTa                                                   <  1:955481/149‑1 (MQ=255)
                                                                                                      gTTTCATCCGGAAGCCGGAAGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgagatgagatcgtgtttgtcatctggagccatagaacagggttcgtcatgagtcatcaacttaccttcgccgacagtg                                                <  2:761907‑M2/149‑100 (MQ=255)
                                                                                                        ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt                                              >  1:900389/1‑149 (MQ=255)
                                                                                                        ttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATCAAGTTACTCACTCTTTTCTATTTAt                                              <  1:641883/149‑1 (MQ=255)
                                                                                                         tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATg                                             <  2:956407/149‑1 (MQ=255)
                                                                                                             ccGGAACCCGGACGAAAGTAAAACTGCATCTGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                         >  1:1064868‑M2/1‑43 (MQ=255)
                                                                                                                gAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagggaattcagcag                                      <  1:1151263‑M2/149‑110 (MQ=255)
                                                                                                                  atccggATGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                                    >  1:445856‑M2/3‑38 (MQ=255)
                                                                                                                  aCCCGGACGAAAGTAAAAATGCATATGTGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagatctgggtttatcctgagtcatcaacttaccttcgccgacagtgaattcagctgta                                    >  2:605774‑M2/1‑38 (MQ=255)
                                                                                                                  aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                                    >  1:286221‑M2/1‑38 (MQ=255)
                                                                                                                          gAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                            >  1:844316‑M2/1‑30 (MQ=255)
                                                                                                                          gAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                            >  1:844317‑M2/1‑30 (MQ=255)
                                                                                                                            aaGTAAAAATGCATATGAGTTGCACTATGAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtata                          >  2:938262/1‑149 (MQ=255)
                                                                                                                                 aaaaTGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgt                     <  1:394996/149‑1 (MQ=255)
                                                                                                                                    aTGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaa                  <  2:1105742/149‑1 (MQ=255)
                                                                                                                                    aTGCATATGAGTGGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAaatatgtaaa                  <  2:324455/149‑1 (MQ=255)
                                                                                                                                     tGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat                 <  2:43944/149‑1 (MQ=255)
                                                                                                                                      tgtttgggtaattactaaggaaggtgcgaacaagtccctgatatgatatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacctaccttcgccgacagtgaattcagcagtaagcgccgtcagacccgaaaa                >  1:249820‑M2/14‑18 (MQ=255)
                                                                                                                                       cATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATGTATTAAGTTACTCACTCTTTTCTATTTATGACGTGCGCGTGTTTGTGTaaaggtaaatgt               >  2:315914/1‑149 (MQ=255)
                                                                                                                                       cATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTCTTTGTATaaacgtaaatgt               >  1:542622/1‑149 (MQ=255)
                                                                                                                                         tatGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag             >  2:1045272‑M2/1‑15 (MQ=255)
                                                                                                                                              ggtgcACTAAggaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcaccaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt        >  2:186818‑M2/3‑10 (MQ=255)
                                                                                                                                               ttGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATGTATCATCAGGTATCGCATATCTAGTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCtt       >  1:599865/1‑149 (MQ=255)
                                                                                                                                               ttGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCtt       <  1:1161967/149‑1 (MQ=255)
                                                                                                                                                 tccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGGTAATGTAAGTCCTTGt     >  2:1208412‑M2/4‑149 (MQ=255)
                                                                                                                                                  ccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGGTTGGTTTTGTATAAATGTAAATGTGAGTCCTTGtt    <  2:881359‑M2/147‑1 (MQ=255)
                                                                                                                                                  ccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGtt    <  2:501182‑M2/147‑1 (MQ=255)
                                                                                                                                                  cACTAAggaaggtgctaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg    >  1:556644‑M2/1‑6 (MQ=255)
                                                                                                                                                  cACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg    <  2:838352‑M2/149‑144 (MQ=255)
                                                                                                                                                  cACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg    <  2:1022025‑M2/149‑144 (MQ=255)
                                                                                                                                                  cACTAAggaaggtgcgaacaagtccctgatatcagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg    >  1:842161‑M2/1‑6 (MQ=255)
                                                                                                                                                   aCTAAggaaggtgcgaacaagtcactgaaatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt   <  1:686672‑M2/149‑145 (MQ=255)
                                                                                                                                                   aCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc   <  2:707047/149‑1 (MQ=255)
                                                                                                                                                    cTAAggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc  >  2:278063‑M2/1‑4 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCC  >  CP009273/2400109‑2400405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.