| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,282,421 | A→G | 13.9% | intergenic (+439/+122) | narI → / ← tpr | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,282,421 | 0 | A | G | 13.9% | 127.1 / 8.4 | 80 | intergenic (+439/+122) | narI/tpr | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein |
| Reads supporting (aligned to +/- strand): ref base A (25/36); new base G (8/5); total (34/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTC > CP009273/1282273‑1282566 | tcctCCTTACACGCTGGGCCAGAAGATAAGATTGGGGCTGCGTTGCAGAATTCCGTGGTTTTTGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGa < 2:1042058/146‑1 (MQ=14) ccgtccacgtgtGGGCAGCAGGTTTAATTGGGTATTCGTTTGAGAATTCCGTGGTTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCt < 2:208507/138‑1 (MQ=14) ttCCCCGCTTGGGCAGAATATTTGATTGGGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGCGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGAcgcgcg > 1:808579/1‑149 (MQ=255) ctCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCGTTTGAAAGTGATGGTGGGGGGGGAAGGATCACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCg > 2:924492/2‑149 (MQ=255) tCCCCGCTTGGGCAGAATATTTGACTGCGGATTCGTTTGAGAATTCCGGGGTTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCCGGAA‑TGGGCCTGCGGCAACGCTCTCTCGCTGACGCTCGa < 1:606676/149‑1 (MQ=14) cccGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgt < 2:498521/149‑2 (MQ=255) ccGCTTGGGCAGATTATTTGATTGCGGTGTCGTGTGAGAATTCCGGGGCTTGTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTACCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc < 1:35190/149‑1 (MQ=14) gCTGGGGCAGAATGTTTGATTGGGGATTCGTTGGAGAATGCCGGTGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCTTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGa < 1:1105523/149‑1 (MQ=14) cTTGGGCAGCATCGTTGATTGCGGATTCGTTTGAGAATTCCGGGGGGTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGaa < 2:69394/149‑1 (MQ=14) tGGGCGAAATGTATGATTGGCGAGTGGTTTGAGGTTTTGGTGACTTGTGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc < 2:578339/149‑1 (MQ=11) tGGGCAGAATATTTGATTGTGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc > 1:1196467/1‑149 (MQ=255) cAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTG‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCttgg > 2:1138464/1‑147 (MQ=255) aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGt > 1:977489/1‑149 (MQ=255) aaTATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGCAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCg > 1:722521/1‑149 (MQ=255) gcttGCGGTTTCGTTGGAGGATTCCGGGGCTTGTGAAAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCGGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc < 2:1052661/147‑1 (MQ=17) gATTGCGGATTCGTTTCAGAGTTCCGGGGCTGTGGGAAGGGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTGCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc < 1:529838/149‑1 (MQ=14) ggggtCGTTTGAGGATTCCGGGGCTTTTGGGAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc‑c < 2:616728/145‑1 (MQ=255) gTTTGAGGATTCCGGGGCTTTTGGAAGGGATGGTGGTGGGGGAAGGAGTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTcccc < 1:598590/149‑1 (MQ=14) gTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTcccc > 1:1015840/1‑149 (MQ=255) gTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTcccc < 1:61802/149‑1 (MQ=255) gTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGGCGAAGCTTCTCATC‑CTTcccc > 1:933938/1‑149 (MQ=255) gTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTCCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTcccc < 1:976431/149‑1 (MQ=255) gTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGAGCTTCGCCCTTCGGGTC‑GTTGCCTCCGGCAACGCCCTCTCGCTGACGCTCGAGCCGAACCTTGGTCGAAGCTTCTCAGC‑CTTcccc > 1:113819/1‑149 (MQ=14) tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCGTCAGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCGCATC‑CTGCCCCg > 1:233494/1‑149 (MQ=255) tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCAGCTCGCTTGGGCGTTGGGGAG‑GTTACGTGCGGCACCGCTAGTGCGGTGCCGCGCGGGCCGCGCCTCAGTCGAAACTTCTCATC‑CTTCCCCg > 2:200835/1‑149 (MQ=9) agaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAGGCAGGGATGGGGACCTTGCCCTTGAGGGC‑GTTGCCTGCAGCGACGCTCTCGCGGTGAGGCGCGAGCCGAAAATTAGACGAAGCTTCTCGTC‑CTTCCCCGCAtc > 2:570640/1‑148 (MQ=9) gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCCTgg > 1:579646/1‑149 (MQ=255) gaATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGGC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGGACCGTAGTCGAAGCTTCTCATC‑CTTCCCCGCGTgg > 1:78039/1‑149 (MQ=14) gttctgggggGTTTGGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATC‑CTTCCCCGCATggg < 2:1073419/143‑1 (MQ=11) aaTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGGTCTCTCGCTGGCGCGCGGGCCGAACACTAGTCGAAGCCTCTGATC‑CTTCCCCGCAAggg > 2:1176466/1‑149 (MQ=14) aaTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATAACTCAACGCCGCGCGCTACGGCCGT‑GGGTCAGCACCCGGCTACAACGCTCTGTCGGCCGCACCCTAGACGAACAATAGTCGAAGCTTCTCATC‑CTTCCCCGCATggg > 2:173822/1‑149 (MQ=2) cTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGGGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATAttt < 2:248513/149‑1 (MQ=255) tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAGCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGACAGACTAtttca > 2:1033147/1‑147 (MQ=255) aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGc < 1:500707/149‑1 (MQ=255) aaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCGTTCGGGTC‑GTTGCCTGCGGCACCGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCCGAgtacggaattgcg > 2:5797/1‑139 (MQ=11) tggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc < 2:448969/88‑1 (MQ=38) tggtggGGGAAGGATTCCTCAGCGCTGCGCTCTTCGTCTTTCGGTAC‑GTCGCCTGCCGAGACGCTCTCTCGCTGTCGCACGCGCTCCCTACTCGTCG‑CTCTTCCGATCTCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCtt < 2:808579/149‑1 (MQ=2) tggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCTGAATATTTGATTGCGGATTCGCtt < 1:924492/149‑1 (MQ=255) ggggAAGGCTTACTCCGCGGATTTCGTTTCTCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATGTGATTGCGGATTCGCTTGtgag < 2:562576/149‑1 (MQ=14) ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATggg > 1:1176315/1‑118 (MQ=40) ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTG‑GCTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTGGAAGCTTCTCATC‑CTTCCCCGCCTGGGCAGAATGTTTGATTGCGGGTTCGGTTGATGGTTCAgg > 1:606033/1‑149 (MQ=14) ggATTACTCAGCGCTGCGCACTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGATAATCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGCGTTCAgg > 1:902340/1‑149 (MQ=17) gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAggg > 2:1238206/1‑149 (MQ=255) gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGGCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAGTATTTGATTGGGGGTTCGCTTGGGGGTTCAggg > 2:936312/1‑149 (MQ=14) gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATGTTTGATTGCGGATTCGCTGGGGAGTTCAggg > 2:636850/1‑149 (MQ=255) cttACTCAGCGCTCCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTTCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa < 1:887344/148‑1 (MQ=255) aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGa < 1:899955/149‑1 (MQ=255) cTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACttt < 2:921516/149‑1 (MQ=255) cTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACttt < 1:1236931/149‑1 (MQ=255) cTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACttt < 1:339131/149‑1 (MQ=255) cgcTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCCTGGGCAGAATATTTGATTGCGGATTCGCTGGGGAGTTCAGGGGCTTTTGcaa > 2:451664/1‑149 (MQ=11) cgcTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGCTTCGCTTGAGACGTCAGGGACCTTTGaaa > 2:1147652/1‑149 (MQ=255) cgcTGCGCGCTTCGCCCTTCGGGTC‑ACTGCCTGCGGCAACGCTCTCTCGCGGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaaa < 2:198868/149‑1 (MQ=255) cTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGt < 1:999482/149‑1 (MQ=255) gttCGCCCTTCGGGTC‑GGTGCCGGCGGTAACGCTCTCCCGCTGACGCCCGAGCCGAACCTTAGTCGAAGCTTCTCAGC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg < 2:180570/148‑1 (MQ=17) ttCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCCCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg < 1:29794/149‑1 (MQ=255) ttCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCCCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtgg < 1:1160131/149‑1 (MQ=255) gCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc‑c > 2:502632/1‑75 (MQ=25) gCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc‑c < 1:502632/75‑1 (MQ=255) gCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtggtgg < 2:664291/149‑1 (MQ=255) cgttCGGGGC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTgggg < 2:1103084/147‑1 (MQ=255) ccTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTgggg < 2:1102951/149‑1 (MQ=255) gggTC‑CTAGCCTGCCGCAACGCCCTCCCCCTGCCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATAGCCAGAATATTGGAATCCGGATTCGCTTGAGAATTCAGAGACCTTCGAAAGCGATGGCGGTGGCGGAAgg < 2:664794/149‑1 (MQ=14) ggTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGa < 2:98681/149‑1 (MQ=255) gTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGAAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAt < 1:570640/149‑1 (MQ=255) tC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGGTTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAGGTGATGGTGGTGGGGGAAGGGtt > 1:401963/1‑149 (MQ=255) tC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGGTGGTGGTGGGGGGAGGAtt > 1:274422/1‑149 (MQ=255) c‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGTACCTTGGTCGGAGCTTCTCCTC‑CTTCCCCGCTTGGGCAGAATATTTGATTGCGGATGCGGTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa < 2:1026302/149‑1 (MQ=11) c‑GTTGCCGCCGGCAACGCTCCCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCCTC‑CTTCCCCGCATGGGCAGAATATTTGATTGTGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa < 2:172433/149‑1 (MQ=11) cTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACTCTCGCCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGAAGTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAgc > 2:323035/1‑149 (MQ=14) tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTaggccgct > 2:888205/1‑142 (MQ=255) tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTGCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACCCAgcg < 1:200835/149‑1 (MQ=255) ggCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTg < 2:1043267/149‑1 (MQ=255) ctgtctcGCTGCCGCTCTAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTCCCCCGCATGGGCAGAATATTTGATTGCGGATCCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt < 1:564462/146‑1 (MQ=14) ctctctCGCTGTCGCTCGAGCCGGACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGGTTGCGGATACGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt < 2:387451/149‑1 (MQ=255) ctctctCGCTGACTATCGAGCCGACGCTAATTTTTATCCACTCGAC‑CTTCCACGCTCGGGCCCTACATGTGGCTGCGGAGTCGTTTGAGGTTTCAGGGACTTTTGGAAGTGATGGTGGTGGGGGAAGGTATACTCAGCGCTgcgagatg < 2:566063/149‑6 (MQ=2) tctctcGCTGACTCGCGAGCCGAACCTTAGTCGAACCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc < 1:691012/149‑1 (MQ=255) tctcGCTGCCGCTCCAGCCGACCCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc < 1:684506/149‑1 (MQ=255) tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAg > 2:1061246/1‑60 (MQ=255) tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGGGGTGGGGGAAGGATTAGTCCGCGCTacgcgcctggc > 2:363441/1‑144 (MQ=17) cTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACATCGGAAAGGGGTGGTGGAGGGGAAAGGAGTACTCAGCGCTGCGCGCCTCGCCGTTc > 2:873011/1‑149 (MQ=17) | TCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTC‑GTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATC‑CTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTC > CP009273/1282273‑1282566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |