| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,298,565 | C→G | 7.3% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,298,565 | 0 | C | G | 7.3% | 339.3 / 13.3 | 112 | intergenic (+693/+22) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| Reads supporting (aligned to +/- strand): ref base C (43/60); new base G (2/7); total (45/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 113 total aligned reads displayed.
GCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGCAACTC > CP009273/2298418‑2298712 | gcgcGTCTTATCAGCCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTACAGCCCGAGCCGGTTGCCTGATGCGACGCTGCCGCGTCCTCTCAGCACACGCCACATCCGACGT‑Acc > 2:132554/1‑149 (MQ=17) gTCTTATCAGGCATTGATCGCTGTCAAGTCCTCCACCCCGCAGTTCGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGc < 2:46871/149‑1 (MQ=17) tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGcc < 1:285402/149‑1 (MQ=255) tCTTATCAGGCCTACACCGCTGAGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGcc > 1:561933/1‑149 (MQ=255) cTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCg < 1:187780/149‑1 (MQ=255) ttACCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑GGTATGCCgg < 1:147/149‑1 (MQ=17) tATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGa < 1:362448/149‑1 (MQ=255) aTCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCTACCCCCCATCCGGCGT‑ACCCTGACgcgg > 2:187780/1‑146 (MQ=11) tCAGGCCTACACCGCTGTAAAGTGCTCCCCCCCGGAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑GGTATGCCGGAtg < 1:251502/149‑1 (MQ=17) ccAGGCCAACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATTCGCCACATCCGGCAT‑GGTATGCCGGAtg < 1:745642/148‑1 (MQ=17) cAGGCCTTCTCCGCTGAGACGGGCTCCACCCCGTAGGTCGGATGTGGCGGTTACGCCGCATCCAACATCGAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑GGTATGCCGGAtgt < 2:558194/149‑1 (MQ=17) cAGGCCTACCCCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGAtgt < 1:659257/149‑1 (MQ=255) cAGGCCTACACCACTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑GGTATGCCGGAtgt < 1:1163016/149‑1 (MQ=17) ggCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCCCATCCGGCAT‑ACCAGGCCGGATGTgg > 1:38737/1‑149 (MQ=255) ggCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCACATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑GGTATGCCGGATGTgg < 2:886201/149‑1 (MQ=17) gCCTACAGCGCTGGGAAGTGCTCCCCCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGc < 2:730073/149‑1 (MQ=255) gCCTACACCGGCGTGAAGTGCTCCCCCCCGTAGGTGGGATACGGCGGTTCCGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGc < 2:1021018/149‑1 (MQ=18) gCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGc > 2:121822/1‑149 (MQ=255) ccTCCACCGCTGTGAAGTGCTCCACCCCGTAGGGTGGACAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCg < 1:295867/149‑1 (MQ=255) ccTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATTCGCCACATCCGGCAT‑ACCATGCCGGATGTGGCg < 1:796646/149‑1 (MQ=255) ccTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCg < 1:494177/149‑1 (MQ=255) acacCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCCCATCCGGCAT‑ACCATGCCGGATGTGGCGTAt > 1:638973/1‑149 (MQ=255) acacCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTAt > 2:1200678/1‑149 (MQ=255) acacCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCAAACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTAt > 2:377977/1‑149 (MQ=255) cacCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATc > 1:976138/1‑149 (MQ=255) acCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGGATCa > 1:985587/1‑149 (MQ=255) acCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGGATCa > 1:1141769/1‑149 (MQ=255) acCGCTGTGAAGCGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCa < 1:327746/149‑1 (MQ=255) tGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACACCTAACGGCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGACCCACCCGGCAT‑ACCATGACGGCTATGGCCGATCATTCCAACGCaaa > 1:1166824/1‑148 (MQ=17) tCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATc > 2:158374/1‑149 (MQ=255) ccACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCGCGAGGCGGTTGACTGATGCGACGCTGGCGCGTCTTATCAGCATACGACACATCCGGCAT‑GGCATGCTGGGTGTGGGGTATCGTTACAACGCAatatgc > 1:134834/1‑147 (MQ=18) ccACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATcc > 1:1068310/1‑149 (MQ=255) cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCa < 2:1093192/149‑1 (MQ=255) cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCa < 1:613238/149‑1 (MQ=255) cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAACCGGTTGCCTGCTAGGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCAGATGTGGGTTATCATTACAACGCAATCTCCGCCa > 1:591702/1‑149 (MQ=25) cccGGAGGTTGGATACGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTACCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCa < 2:817472/149‑1 (MQ=255) cGTCGGTTGTACAAGGCGATTACGCCGCTTCCAACATCTAACGCTCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCAct < 2:1054545/149‑1 (MQ=37) aGGTTGGATAAGGCGGTTCCGCCGCATCCAACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCActtct < 2:942060/149‑1 (MQ=255) gTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCttt > 2:473324/1‑149 (MQ=255) gTTGGATAAGGCGGTTACGCCGCATCCAACATCGAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACACCGCAATATCCGCCACTTCgtt > 1:858132/1‑149 (MQ=255) ttGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGACGGCGGCGTATCATTACAACGCAATATCCGCCACTTCcttt > 2:1182760/1‑149 (MQ=25) gATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGa > 1:1135323/1‑149 (MQ=255) gATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGa > 1:357326/1‑149 (MQ=255) gATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGa > 2:369907/1‑149 (MQ=255) ggggggTTACGCCGCGTCCGACGTCTTTGGGCGGGGCCGGTCTCCTGACTCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACgg < 2:491929/145‑1 (MQ=255) gCGGTTACGCCGCATCCCACATCTAACGCCCGAGCGGGTAGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACACCGCAACATCCGCCCCTTCTTTTTGAACGGGt > 2:211774/1‑149 (MQ=37) cGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGtt > 1:833040/1‑149 (MQ=255) tACGTCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACAGCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCgg < 1:725473/149‑1 (MQ=255) gccgcAACCAACATCTAACGCTAAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGttt > 2:273134/1‑149 (MQ=255) ccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTc < 1:411608/149‑1 (MQ=255) ccgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTc > 1:410049/1‑149 (MQ=255) cgcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCa > 1:1144655/1‑149 (MQ=255) gcATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCaa < 2:1068310/149‑1 (MQ=255) atctaacatctaacGCCCGAGCAGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACt < 1:91502/149‑1 (MQ=255) cccaCATCTAAGGCCCGGGCCGGTTGCCGTATGCGACGCTGGTGCGTCTTATCAGCATACGCCACATCCGGCAT‑CCCATGCCGGATGCGGCGTATAATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGc < 2:530095/146‑1 (MQ=255) ccAACATCTAACGCCCGAGCCGGTTGCCTAATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATGCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTGTTGAACGGGTTGCGGGTTCAACTGc > 1:759880/1‑149 (MQ=255) aTCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGttt < 1:195361/149‑1 (MQ=255) tccaaCGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCg > 2:1167840/4‑77 (MQ=255) tCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTc < 2:780463/149‑1 (MQ=255) tCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTc > 2:81226/1‑149 (MQ=255) cTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGCTTGCGGTTTCAACTGCGGtttag > 1:251799/1‑147 (MQ=255) ccGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCTGGTtcgtcg < 2:212192/148‑1 (MQ=255) aCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCg < 1:7733/149‑1 (MQ=255) ggccGCGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTa < 2:124384/147‑1 (MQ=255) gCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTa > 2:1062720/1‑149 (MQ=255) gAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTAt < 1:946970/149‑1 (MQ=255) gAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCAACACTCCTTTTTGGACGGGTTGCCGTATCAACTGCGCTTTCGGCATATTaa > 1:35204/1‑148 (MQ=38) ggTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATctgct < 2:203411/149‑1 (MQ=255) ttGCCTGATGCGACGTGGACGATTCTTATCAGCATTCTCC‑CCTCAGCAATCACCGTTCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCtgctgc < 1:897613/149‑1 (MQ=255) ccTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATAGTTACAACGCAATATCCGCCACTTCTTTTTGAACGGATTACGGTTTCAACTGCGGTTTCCGCGTAGTATCTGctgcctg > 1:723057/1‑149 (MQ=255) gttGCGACGCTGGCGCGTCTTATCAGCATACGCCACAGCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCgg < 2:76896/147‑1 (MQ=255) gATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCgg < 1:158374/149‑1 (MQ=255) aTGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGc < 1:369907/149‑1 (MQ=255) tGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCt < 1:575359/149‑1 (MQ=255) tGCGACGCCGGCGCGGCTTATCAGCATACGCCACATCCGGCAT‑ACCCTGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCt < 1:569066/149‑1 (MQ=255) cGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGAGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTg < 1:851903/149‑1 (MQ=255) aCGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGCACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTc < 1:853761/149‑1 (MQ=255) aCGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTc > 1:144917/1‑149 (MQ=255) aCGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTc < 2:756610/149‑1 (MQ=255) aCGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTc < 2:756168/149‑1 (MQ=255) ggCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGATTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGt > 1:699612/1‑149 (MQ=255) gcgcGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCCCTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGCCGTCGtt > 2:85418/1‑149 (MQ=255) gccTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTGTCATTACAACGCAATATCCGCCACTTCTTTTTGCACCGGTTGCGGTTTCATCTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAAc < 2:932261/147‑1 (MQ=255) gTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAAc < 1:944193/149‑1 (MQ=255) tCTTATCCGTCTACGCGCCGTCCGGGAT‑AGCGGGCCGGATGTGGCGTATCGTTTCAACGCAATACCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAAcc < 2:1172021/149‑1 (MQ=255) tATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCa < 2:877508/149‑1 (MQ=255) aTCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAg < 1:179992/149‑1 (MQ=255) taatgaTACGCCACATCCGGCAT‑GGTATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAgg > 1:1145593/6‑148 (MQ=38) cagacccGGCAT‑CCCATGCCGGATGTGGCGCAGCATTACAACGCGATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGgt < 2:549510/144‑1 (MQ=255) cacaTCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCGACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGgt > 2:668545/1‑149 (MQ=255) acaTCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGGTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGGCGTAGTTCAACCCCAGCACTTCGCTgggt > 1:1230640/1‑147 (MQ=255) tCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTAc < 1:995605/149‑1 (MQ=255) cccgCAG‑ACCATGCCGGATGTGGCGTATCATGACAACGCAATATCCGCCACTTCTTGTTGCACGGGTTGCGGTTTCCACTGCGGTTTCGGCTTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACt < 1:322985/146‑1 (MQ=255) ccGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCCATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACt < 1:50675/149‑1 (MQ=255) cGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCACAACGTCAATTAAAACGGGGTGGGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCGGCGGCTTGTCGGAGTGCAACCCCAGCACTgcgcgcaggtcctg > 2:932405/1‑139 (MQ=255) ggCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGc < 1:304512/149‑1 (MQ=255) aT‑ACCATGCGGGATGTGGCGTATCCTGACGACGCAATATGCGCCACTTCTTTTTGGACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGCAAc < 2:936725/149‑1 (MQ=255) aT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGCAAc < 2:251070/149‑1 (MQ=255) aT‑ACCATGCCGGATGTGGCGTATCATTACAACGAATTATCCGCCTCTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGCAAc > 1:1224083/1‑149 (MQ=255) aCCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGCAACTc > 1:1048955/1‑149 (MQ=255) | GCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCATACGCCACATCCGGCAT‑ACCATGCCGGATGTGGCGTATCATTACAACGCAATATCCGCCACTTCTTTTTGAACGGGTTGCGGTTTCAACTGCGGTTTCGGCGTACTATCTGCTGCCTGCGGCTTGTCGTAGTTCAACCCCAGCACTTCGCTGGTGTACTGCAACTC > CP009273/2298418‑2298712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |