| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,370,777 | C→T | 13.0% | M1M (ATG→ATA) † | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,370,777 | 0 | C | T | 13.0% | 183.1 / 8.4 | 73 | M1M (ATG→ATA) † | sspA | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Reads supporting (aligned to +/- strand): ref base C (29/34); new base T (6/4); total (35/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTG > CP009273/3370631‑3370925 | aGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACTTGATGTCTATGGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCAt < 1:544978/149‑1 (MQ=255) tCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCCCAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTCCCGACCGTTTGTTGGCAGCGGCAGCTATGaa > 1:460997/1‑149 (MQ=255) tCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGaa > 1:1015535/1‑149 (MQ=255) tCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGaa < 1:102865/149‑1 (MQ=255) tCCTGAGGCGCATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGaa < 1:1082800/149‑1 (MQ=255) acgtGAGGCGGACTGTCCTTTTCCACGTGGTCGATCTAGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTTATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGaa < 1:403988/146‑1 (MQ=255) ccTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGaaa > 1:318916/1‑149 (MQ=255) tGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGAAAAc < 1:197432/149‑1 (MQ=255) ggCGGATTGTCCTTTTCCACGTGTTCGATCTCGCAACTTCCACCGTTCTTAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTc < 2:1182956/149‑1 (MQ=255) ggCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGCTGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTc < 2:815180/149‑1 (MQ=255) gCGGATTGCCCTGTTCCACGTCTTCCATCTCGAAACTCACACCTTCCTCCGCCAGCACAATGCGGACCGGATGGCTATAGATGTCATTAGAACCGTAAATCAACGTCATTACCGACCGTTTGTTGGCAGCGACAGCCATGAAAACCTcc < 2:934111/149‑1 (MQ=255) cGGATTGTCCTTTTACTCATGTTCCACCCCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCa < 1:532358/149‑1 (MQ=255) cGGATTGTCCGTTTCCACGTGTGCGCTCTCGAAACTTTCACCTTTCTAAGCGCACAAATGGTGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCa < 1:287074/149‑1 (MQ=255) ggATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTTGCAGCGACAGCTATGAAAACCTCCAg > 1:498905/1‑149 (MQ=255) ggATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGAAAACCTCCAg > 1:669679/1‑149 (MQ=255) gATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCGGATGGCTATAGATGTCAGTAGGACCGGAAACCAGCGTCATTACCGAACGTATGTGGGCAGCGACAGCTATGGAAACCTCCAgt > 1:115806/1‑148 (MQ=255) gTCCTTTTCCACGTGTTCGATCTCGAAACTTTCACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGATAGCCATGAAAACCTCCAGGtata < 2:846140/149‑1 (MQ=255) tCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCGTTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGAATAg > 2:812335/1‑149 (MQ=255) tCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAg > 2:547792/1‑149 (MQ=255) ttttCCACGTGTTCGATTTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCa > 2:50242/1‑149 (MQ=255) ttttCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGAAAACCTCCAGGTATAGTCa > 1:264612/1‑149 (MQ=255) ttttCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCa > 1:1200769/1‑149 (MQ=255) ttttCCACGTGTTCGATCTCGAAACTTACACCATTCTCAGCCAGCCCAGTGAGCACCTGTTGGACAAAGAAATCACTAGCCCCGGAAAACTGCGACATTCCCCAAGATTGTTTTTCAGCTGTTGCCATGAAAACCACCAgaactagcaa > 2:1032064/1‑140 (MQ=255) ttCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATCGATGTCGGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTCTAGTCAGa > 1:1094807/1‑149 (MQ=255) ttCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGa > 1:447063/1‑149 (MQ=255) ttCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGa > 1:765893/1‑149 (MQ=255) tcGTGTTCGATTCCGTACCTTAGCCCTTTCTCAGCCAGCACAATGGGGACCTGATGGCTATAGATTTCAGTAAGACCGGAAAACAGCGTCATTACCGAACGTTTTTTGGCAGCGACAGCCGTGAAAACCTCCAGTTATAGTCAGAAttt < 2:699834/148‑1 (MQ=255) cGTGTTCGATCTCGTAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCGTGAAAACCTCCAGGTATAGTCAGAAtttt < 1:777887/149‑1 (MQ=255) tcGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCa < 1:718194/149‑1 (MQ=255) cGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAg > 2:479041/1‑149 (MQ=255) gAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCGTTGCCGAACGTAGGTTGGCAGCGACAGCCATGAAAGCCGCCAGGGCTCGTCAGAATTTTTTTGGCTACCAGc > 1:38408/1‑149 (MQ=255) aaCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGcca < 2:782029/149‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCTTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGccac < 1:793479/149‑1 (MQ=255) aCTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTACAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTGGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGccac < 1:793710/149‑1 (MQ=255) gcccTTTCTCAGCGAGCAGACTGCGGCCCTGGTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGGTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGt < 1:613436/147‑1 (MQ=255) gccctactcAGCCAGCCCCATGAGGACCTGAGAGCTATAGATGTCAGTA‑GACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGCATAGTCAGAATTTGTACTGCTACCAGCCACCAGGTgg < 2:842720/143‑1 (MQ=255) cgctccgcgggcgtcacaATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTTCTACCAGCCACCAGGTgg < 2:798521/135‑1 (MQ=255) cTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACGGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGGCAGAATTTTTACTCCTACCAGCCACCAGGTGGc > 2:363263/1‑149 (MQ=255) cTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc > 1:743814/1‑149 (MQ=255) ttCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAGCGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCa < 1:208908/149‑1 (MQ=255) cagccatcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCa < 1:168756/149‑1 (MQ=255) ccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa < 1:191459/149‑1 (MQ=255) ccagcACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa < 1:394283/149‑1 (MQ=255) gCGGACCTGATGGCTATCGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAc < 2:394685/149‑1 (MQ=255) aCCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCaa < 2:351541/149‑1 (MQ=255) aCCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCaa < 2:351382/149‑1 (MQ=255) tGATAGATATAGATGTCAGTAGGAACATAAAAACGAGTCATTAGCGCACGTTTGTTGGCAGCGACAACCATGGAAACCTCCAGGTGTAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCTAGTCAGAAGTTGCTTTACCCAGTaa > 2:532105/1‑149 (MQ=255) aTGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAgg < 1:271746/149‑1 (MQ=255) tGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGACCGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGa < 2:57962/149‑1 (MQ=255) ggCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGaa > 1:919888/1‑149 (MQ=255) ataGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGAc > 1:154251/1‑149 (MQ=255) ttgcggTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGAAAACCTCCAGGTATATTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGActctct < 2:498905/144‑1 (MQ=255) tGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGActctct < 2:669679/149‑1 (MQ=255) ccGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGaaaa < 2:318916/149‑1 (MQ=255) ccGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGaaaa < 1:479041/149‑1 (MQ=255) gAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCTATGAAAACCTCCAGGTATAGTCAGAATTTTTCCTGCTACCAGCCACCCGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATca < 2:115806/149‑1 (MQ=255) gAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAAGTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATca < 1:794817/149‑1 (MQ=255) aaaaCAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTCTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaa > 1:878264/1‑149 (MQ=255) aaaCAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaaa < 1:547792/149‑1 (MQ=255) aaaCAGCGTCATCACCGAACGTTTGTTGGCCGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaaa < 1:812335/149‑1 (MQ=255) cGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGCTGTAGTCAGAATGTTTACTGCTACCAGCCACAAGGTGGCCGGTCAGAAGTTGTGTTACACCATAAGGAACGACTCTCTTTGTTCGAAAATcaaaacaaaa > 2:334785/1‑149 (MQ=255) cATTACCGAACGTGTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCCCTTTGTTCGAAAATCAAACAAAAAATg > 2:753357/1‑149 (MQ=255) aTTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCACACAAAAAATGa > 2:389803/1‑149 (MQ=255) aTTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGa > 1:1197832/1‑149 (MQ=255) aTTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGa > 1:771086/1‑149 (MQ=255) ccGAACGTGTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCaa > 2:699252/1‑149 (MQ=255) aaCGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCACTAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAc > 1:111960/1‑149 (MQ=255) aaCGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGCGCaaaat > 2:923472/1‑146 (MQ=255) aCGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGCACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAcc > 2:800234/1‑149 (MQ=255) tttGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAAGGAGCAAAACCCGa > 1:635309/1‑149 (MQ=255) gCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCACCAAGGCACGCCCCCCTTTGTCCGACAATCAAACAAAAACTGAGCACTACCCGACATTTgg > 2:404956/1‑149 (MQ=255) gCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCTGACGAAAGATGGGCAATACCCGGCGTTTgg > 1:1030273/1‑149 (MQ=255) gCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTgg < 1:50242/149‑1 (MQ=255) cATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTg > 2:1088109/1‑149 (MQ=255) | AGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTG > CP009273/3370631‑3370925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |