| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 444,779 | C→T | 72.5% | W440* (TGG→TAG) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 444,779 | 0 | C | T | 72.5% | 100.7 / 35.5 | 74 | W440* (TGG→TAG) | cyoB | cytochrome o ubiquinol oxidase subunit I |
| Reads supporting (aligned to +/- strand): ref base C (8/13); new base T (21/31); total (29/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCACCGAG > CP009273/444633‑444925 | ggTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGctac < 2:860970/149‑1 (MQ=255) gTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCACAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGctacc > 1:823661/1‑149 (MQ=255) tCAATCTGCTGGCTCAAACGAGGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGccacca < 2:693774/149‑1 (MQ=255) tCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGctaccc > 2:81355/1‑148 (MQ=255) tCAATCTGCGGGCACAAACTACGGGTGATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGGTTGAAACCGAACGCTTTAGGctacca > 2:1037895/1‑149 (MQ=255) aTCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGGACGAGCGGTTACCCCAGGTTTCGTGCAGTTTGAAACCGAACGCTGTAGGCTACAAGTa > 2:996623/1‑149 (MQ=255) gctgGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCACCGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGCAAGCTTTAGGCCACCAGTAGGTc > 1:817104/1‑149 (MQ=255) gctgGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTc > 2:291776/1‑149 (MQ=255) ctgGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCAGACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCa < 2:910323/149‑1 (MQ=255) gCTCAAACGACGGGTCATGCCCCTGAAGCCCAGCGAATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATcc < 1:1037335/149‑1 (MQ=255) cTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATccc > 1:586417/1‑149 (MQ=255) tCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCt > 2:541703/1‑149 (MQ=255) cAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGCCATCCCTg < 1:905900/149‑1 (MQ=255) cgcggggTCATGTCCATGAAGCCCAGCGCCTACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGaa < 2:1043471/145‑1 (MQ=255) cgacgGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGaa < 2:947143/149‑1 (MQ=255) cgacgGCTCATGCGCATGAAGCCCAGCGCAGACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGaa < 2:966354/149‑1 (MQ=255) gacgGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGCACCAGAACGCGCGTTCACCCCAGGTCTCGTTCAGCTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAag > 1:867113/1‑149 (MQ=255) cgGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGACATCCAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAagca < 1:231482/149‑1 (MQ=255) gggTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAagcag < 1:317753/149‑1 (MQ=255) ggTCATGCCCATGAAGCCCAGCGCATACAGTCGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCTGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAagcagc < 1:831497/149‑1 (MQ=255) gTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGcc > 1:113101/1‑149 (MQ=255) cATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGa < 1:1051734/149‑1 (MQ=255) aggCCCATGAAGCCCAGCGCAAACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACAAGAACGCGCGCTTACCCCTGGGTTCGTTCAGGTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGaa < 1:555763/147‑1 (MQ=255) aTGCCCATAAAGCCCAGCGCATACAGGGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAATGCGCGTTTACCCCAGGTTTCTTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGaa < 1:120986/149‑1 (MQ=255) cccATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGAc < 2:251867/149‑1 (MQ=255) cccATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGAc < 2:884965/149‑1 (MQ=255) aaGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGCGGGCCAcgcc > 1:529585/1‑149 (MQ=255) aaGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCAcgcc < 2:1173929/149‑1 (MQ=255) cccAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACgccgcc > 2:45715/1‑149 (MQ=255) tACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCAc > 1:255751/1‑149 (MQ=255) cggTGGCAAAAAGGCAACGAAGAATCCGATGAGCCAGAATCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCGTTATGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGt < 2:177314/147‑1 (MQ=255) gTGGCATAAAGGCAACGAAGCAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTGCGTTTAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTa < 2:396270/149‑1 (MQ=255) ggCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTCCCCCCGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCCTCCCTGCGAAGCAGCCGAAGACGACGCCGCCGATGATCACGTTATg < 2:421918/149‑1 (MQ=255) ggCAGAAAGGCAACGAAGAAGCCGATGAGCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATg < 1:573753/149‑1 (MQ=255) aTAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGaa < 2:954383/149‑1 (MQ=255) aTAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGaa < 1:1237703/149‑1 (MQ=255) aTAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGaa > 2:1039364/1‑149 (MQ=255) tAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAg > 2:293645/1‑149 (MQ=255) aaaGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGt < 2:831539/149‑1 (MQ=255) ggCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAGGTgcg < 2:823661/149‑1 (MQ=255) ggCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTgcg > 1:388650/1‑149 (MQ=255) aaCGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCaa > 1:966118/1‑149 (MQ=255) gaagaaGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCCGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCCAAGCAGCCGAAGACCACGCCGCCGATGAGCGCGTTCTGGAAGTGCGCAATCa > 2:292781/1‑149 (MQ=255) gaagaaGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCa < 1:934486/149‑1 (MQ=255) gaagaaGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTCCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGAGCACGTTATggcgagccgccatgc > 2:1176215/1‑136 (MQ=255) aagcagCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAg < 1:164613/149‑1 (MQ=255) aagCCGATGATCGAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCCAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGaa < 2:648712/149‑1 (MQ=255) atgacCCAGAACCAGCGCGCGCGTTTACCCGAGGTTTCGTTCAGTTTGAACCCGAACGCCTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCt < 2:583416/149‑1 (MQ=255) ttCCAGAACCAGACCGCGCGGTTGCCCCAGGTTTCTTTCAGTTCGAAACCGAACGCTTTAGGCTTCCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGtt < 2:855023/148‑1 (MQ=255) atCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGCACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGACGATGATCAAGTTATGGAAGTGCGCAATTAGGAACAGGCTGtt < 2:298083/149‑1 (MQ=255) ccagaaccagagCGCGCATTTACCCCAGGTTTCGTTCAGCTTGAAACCGAATGCTTTAGTCTCCCAGTAGGAAATCCCTCCGAAGCAGCCGGAGACCACCACGCAGAGGAACAAGTCATGGAAAGGCGCCTAAAGGAACAgccggctat > 2:56763/1‑141 (MQ=255) ccagaaccagaaCGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTAt > 1:419592/1‑149 (MQ=255) aaccagatcGGTCGGTTACCCCAGGTTTCGTGTAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAg < 2:257338/149‑1 (MQ=255) agaacGCGCGTTTCCCGCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCTGGAACAGGCTGTTATGCAGAACg < 1:812904/149‑1 (MQ=255) cgcgtgTTTACCCCGTGTTTCGTTCCGTTTGAAACCGAACGCTTGAGGCTACCGGTAGGTCATCCCTGCGAAGCAGCCTAAGACCAGGGCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCGGTTATGCAGAACGAAGt < 2:15640/149‑1 (MQ=255) cgcgTTTACCCCAGGTTTCGGTCAGTTCGAAACCGAACGCTTTCAGGTACCAGTAGGTCATCGCAGAGCGTCTACCGAAGAAGAACTCTTGTATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTcc < 1:293645/149‑1 (MQ=255) tACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGccc < 1:1175340/149‑1 (MQ=255) aCCCCTGGTTTCGTTCAGTTTGAATCCGAACGCTTTAGGCTACCAGTAGGTCATCCGTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCg < 2:117673/149‑1 (MQ=255) cccAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGACGTCCGCGCCCGGt > 1:351917/1‑149 (MQ=255) cccAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGt > 1:125719/1‑149 (MQ=255) ccAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCACTCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTa > 1:56965/1‑149 (MQ=255) gTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTAGGGAAGCGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGCCCGCGCCCGGCACGGc > 2:57760/1‑149 (MQ=255) tttCGTTCAGTTTGAAACCGAACGCATTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGCACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGcc > 1:352992/1‑149 (MQ=255) cGTTCAGTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCcagc < 1:1037895/149‑1 (MQ=255) cGTTCAGTTGGAAACCGAACGCTTTAGGCGACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCcagc < 1:81355/149‑1 (MQ=255) gtttatttttactccGAATGCTCTCGGCCACCAGTATTTCATTCCGTCTAAGCATCCGAACACCTCGCCGCCGATGATCATGTTATGGAAGTGCGCAACCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCcagca < 2:653810/136‑1 (MQ=255) gTTTGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATGAGGAACAGGCTGTTATGCAGACCGAAGTCCGCGCCCGGAACGCCCGGCGGcgcg > 2:949472/1‑149 (MQ=255) tGAAACCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCa < 1:226338/149‑1 (MQ=255) aaCCGAACGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGAACACGCCACTCCGGATCACTTAATGGATTACCCCAATCAGGAACAGGCTGTTATGCAGAACAAACACCGCCCCCGGTAAGGCCGCCGGCCCGCCAgcc > 2:140922/1‑147 (MQ=255) gAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATcc < 1:1039364/149‑1 (MQ=255) aaCGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATccc > 1:135504/1‑149 (MQ=255) aaCGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATccc > 1:579375/1‑149 (MQ=255) aaCGCTTTAGGCCCCACGGGGCTCGTCCCTGCGAAGCAGCCGAAGACCCCGCCGCCGTTGTTGACGTTATGGAAGTGCGCAATCCGGAACAGGCTGTTATGCAGAACGAGGTCCGCGCCCGGTACGGCCACCAGCATGCCAGTCATccc < 2:455035/149‑1 (MQ=255) aaCGCTTGAGGCCACCATTATGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATTCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATccc < 1:1041984/149‑1 (MQ=255) aCGCTTTAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCg < 1:541703/149‑1 (MQ=255) cgcgTTAGGCCACCAGTAGGTCACCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGc < 2:188600/149‑1 (MQ=255) cGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCGGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGc < 2:209308/149‑1 (MQ=255) tAGGCTACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCAcc > 2:77159/1‑149 (MQ=255) gCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAGGTGCGCAATCAGGAACAGGCCGGTCTGCAGAACGAAGTCCCGGCCCGGGACAGCCAGCAGCACGCAAGCGATCCCGCCCCCCgcg > 2:587699/1‑147 (MQ=255) | GGTCAATCTGCTGGCTCAAACGACGGGTCATGCCCATGAAGCCCAGCGCATACAGTGGCATAAAGGCAACGAAGAAGCCGATGATCCAGAACCAGAACGCGCGTTTACCCCAGGTTTCGTTCAGTTTGAAACCGAACGCTTTAGGCCACCAGTAGGTCATCCCTGCGAAGCAGCCGAAGACCACGCCGCCGATGATCACGTTATGGAAGTGCGCAATCAGGAACAGGCTGTTATGCAGAACGAAGTCCGCGCCCGGTACGGCCAGCAGCACGCCAGTCATCCCGCCCACCGAG > CP009273/444633‑444925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |