| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 3,370,460 | (T)5→4 | coding (320/639 nt) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,370,456 | 0 | T | . | 97.8% | 386.7 / 4.6 | 93 | coding (324/639 nt) | sspA | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base . (41/47); total (44/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTC > CP009273/3370308‑3370600 | cGACCAGGCTGAACTCATCGCTCAGGACGTACGGCTTCTGACCGAAGCCCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCt < 2:198099/149‑1 (MQ=255) ggCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCttttcga < 1:529298/149‑4 (MQ=255) gCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCttttcgat > 1:1179119/1‑145 (MQ=255) aaCTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTcgatgcga < 2:1477264/149‑1 (MQ=255) acccATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTcgatgcgat < 1:1508119/146‑1 (MQ=255) cTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTcgatgcgatg > 2:1309468/1‑149 (MQ=255) aTCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCAt > 2:203625/1‑149 (MQ=255) aTCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGGC‑TTTTCGAGGCGATGCAt > 1:1617541/1‑149 (MQ=255) aTCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGGGTACCAGTC‑TTTTCGATGCGATGCAt > 2:110120/1‑149 (MQ=255) cGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGACCCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGt < 2:1352572/149‑1 (MQ=255) cGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGt < 2:901810/149‑1 (MQ=255) gCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTa < 2:586038/149‑1 (MQ=255) cTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTAc > 2:1197495/1‑149 (MQ=255) aGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGa > 2:444254/1‑149 (MQ=255) agAAGTACGACTTCTGACCGAAGACCGGCGCAATCGCCAGAAGTTCTTCGCGCAGTGCCTTAAATGCGGCATCTGCTTAAGAGGCTGAACCGTTGATGATGGTGTTCATAAGCGTGTACCAG‑GAGTTTCGATGGAATGCATgcagcgac > 1:434313/2‑142 (MQ=255) gTACGGTTTATGACCGAAGACCGGCGCCATCGCCAGCAGTTTTTCGCGCAGTTGCTTACGTGCGGTATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCt < 1:636479/149‑1 (MQ=255) gTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCt < 2:812738/149‑1 (MQ=255) tACGGCTTCTGACCGAAGACCGGCGCACTAGCCTGCATTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCtt > 2:1217298/1‑149 (MQ=255) agggtctCTGACCGAGGCCCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGTACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCttt < 1:452319/143‑1 (MQ=255) cGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATGTGCTTCCGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTTGACCAGGC‑TTTTCAATGCGAGGCTTGTACAGGCgacgtta > 2:372769/1‑143 (MQ=255) ggCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCa < 1:795121/149‑1 (MQ=255) cTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTCCAGCCGGCTTTCAcc > 1:634517/1‑149 (MQ=255) tCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACcgc < 2:262841/149‑1 (MQ=255) tCTGACCGAAGACCGGCGCAACCGCCAGCATTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACcgc > 2:859380/1‑149 (MQ=255) cTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACcgcg > 1:959338/1‑149 (MQ=255) tgacggtggtccGGCGCAATCGGCGGGAGTTCTTCGCGCAGTTGCTTGCGTGCGGCATCTGCTTCAGAAGCTGGACCGTTGGTGGTGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGa < 1:36757/139‑1 (MQ=255) tGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGa < 1:1634452/149‑1 (MQ=255) tGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGa < 2:500486/149‑1 (MQ=255) tGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGa < 1:707009/149‑1 (MQ=255) gACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCGTGCAACGCGAg > 2:355777/1‑149 (MQ=255) gAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTAc > 2:468282/1‑149 (MQ=255) gAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTAGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCAAGTACAGACGGCTTTCACCGCGAGCTAc > 2:1148905/1‑149 (MQ=255) aGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCg < 1:1158334/149‑1 (MQ=255) gACCGGCGCAAGCGCCAGCAGTTCTTCGCGCATTTGCTTACGTGTGGCATCTGCTTCAGAAGCTGAACCGTTGATGATTGTTTTAATCAGGGGGTCCCAGTC‑TTTTCGATGCGATGCATGTACAGACCGCTTTCACCGCCAGCTACCgg < 1:495125/149‑1 (MQ=255) cGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGCGCTACCGGGTa > 2:90370/1‑149 (MQ=255) cGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TGTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGCGCTACCGGGTa > 2:144196/1‑149 (MQ=255) gcAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTCCCGGGTAAACa > 1:1122396/1‑149 (MQ=255) gcAATCGCCAGCAGTTCCTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACa < 2:484092/149‑1 (MQ=255) gCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGCGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCaac > 1:789526/1‑147 (MQ=255) agTTCTTCGCGCGGTTGCTTACGTGCGGCAGCTGCTTCAGAAGCTGACACGTTTAATATGGTGTTCATCAGCGGGCACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGc < 2:314244/149‑1 (MQ=255) ttcGCGCAGTTGCTGCCGTGCGGCATCTGCTTACGCGGCTAAACCGTTGGTGATGGTGTTCATCAGCGTGTACCACTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATg > 2:1215673/1‑149 (MQ=255) tagcgcAGTGGTTTACTTGCGCCATCTGCTGCACAAGCTGAACCGTTGACGATGGTGTTCATCAGCGTGGACCAGTC‑CTTTCGATGCGATGCAGGTACAGACGGCTTTCACCGCGTGCTACCGGGTAAACAGGCATCAGTGGCGGATGc < 2:634572/147‑1 (MQ=255) gccgaGTTGCTTACGTGCGTCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCgg < 1:880219/145‑1 (MQ=255) gcccAGTTGCTTACGTGCGGCATTGGCTGCAGGAGCTGAACCGTTGATGGTGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGAGGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTTGCGGATGCgg < 1:24028/146‑1 (MQ=255) aGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACGGACGGCTTTCACCGCGCGCTACCGGGTAAACAGGCATCAGTGGCGGATGAGGGaaa > 2:407041/1‑149 (MQ=255) aGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGaaa > 1:862579/1‑149 (MQ=255) ttGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTGCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGGAACg > 1:271953/1‑149 (MQ=255) ttGCTTACGTGCGGCACCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTAATAAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCCAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACg < 1:372769/149‑1 (MQ=255) gCTTACGTGCGGCATCTGCTTCAGAAGCTGACCCGTTGAAGTTGGTGTTTATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCt < 2:1120205/149‑1 (MQ=255) gCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCt > 2:97248/1‑149 (MQ=255) cTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGCTGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTc < 1:1638854/149‑1 (MQ=255) cTTACGTCCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTc < 2:144568/149‑1 (MQ=255) ttACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATGAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCa > 2:1133477/1‑149 (MQ=255) ttACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCa < 2:556497/149‑1 (MQ=255) ttACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCCCa > 2:888283/1‑149 (MQ=255) ttACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACAGCGAGCTACCGGGTAAACAGGCACCAGTGGCGGATGCGGGAAACGCtga > 2:42357/1‑147 (MQ=255) aCGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGGAAACAGGCATCAGTGGCGGAGGCGGGGAACGctcctc > 1:1016904/1‑149 (MQ=255) gtccGGCTTCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCa < 1:489329/146‑1 (MQ=255) gTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCa < 2:772094/149‑1 (MQ=255) cGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCttttcga < 2:325168/65‑4 (MQ=255) cGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCttttcga > 1:325168/1‑62 (MQ=255) aTCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTc < 2:530367/149‑1 (MQ=255) aTCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTc < 2:1035149/149‑1 (MQ=255) tCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTcc < 2:360158/149‑1 (MQ=255) cTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATCTTCCa > 1:1549475/1‑149 (MQ=255) tGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGCCGGCTTGCACCGCGAGCTGCATTCTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCAt > 2:315068/1‑149 (MQ=255) tGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCAt < 2:251589/149‑1 (MQ=255) tGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCAATGCATTTACAGACGGCTTTAACCGCGAGCTACCGGGTAACCAGGCATCAGGGGCGGATGGGGGAAAGCCTCGTGCACATATTCCAt > 1:516512/1‑149 (MQ=255) tGCTTCAGAAGCTGAACCGTTGATGATGGTGTCCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCAGCCAGATATTCCAt < 2:1123065/149‑1 (MQ=255) gCTTCCGCAGCTGAACCGTTGATGAGGGTGCTCCTCAGCGTTTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTCCACCGTGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGACATTCCATa < 1:914243/149‑1 (MQ=255) cTTCAGAAGCTGAACCGTTGATGATGGTGATCCTCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTAGCGGGTAAACAGGCATCAGTGGCGGGTGCGGGCAACGGTCATCCAGATATTCCATaa > 2:161181/1‑149 (MQ=255) cTTCAGAAGCCGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGTGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATaa < 2:1286817/149‑1 (MQ=255) ttCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGCCGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCACTGGCGGATGCGGGAACCGCTCATCCAGATATTACATatt > 1:1297835/1‑147 (MQ=255) ttCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAat < 2:549859/149‑1 (MQ=255) ttCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAat < 1:859380/149‑1 (MQ=255) ataaGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAatgat < 2:352105/147‑1 (MQ=255) aaGCTGAACCGTTGATGATGGTGTTCATCGGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGAGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCCTCCAGATATTCCATAATGATGc < 1:1215673/149‑1 (MQ=255) gCTGAACCGTTGATGAGGGTGTGCATCAGCGTGTACCAGTC‑TTTTGGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCga < 1:769444/149‑1 (MQ=255) cTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCgag > 2:214417/1‑149 (MQ=255) aaCCGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGAtt > 2:522349/1‑149 (MQ=255) aaCCGTTGATGATAGGGTTCATCAGCGTGTACCAGTC‑ATTTCTCTTTGATCACAGTGACGCCGGGGCCCGCGGCGAGCGACCGGTTAAACAGGCATCAGTGGCGGATGCGGGAGACGCTCATCAAGATATTCCATAATGCTGAGTGAtt > 1:1166109/1‑149 (MQ=255) aaCCGTGGATGATGGTGTTCAGCAGCGTGTACCAG‑CCTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGCAAACAGGCATCAGTGGCGGCTGCGGGGAGCGCACATCCAGACATTCCATAATGATGCGAGAtt > 1:1142776/1‑149 (MQ=255) ccGTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTcc < 2:1466886/149‑1 (MQ=255) gTTGATGATGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATACTCCATAAGGATGCGAGATTCCca < 1:968660/149‑1 (MQ=255) gatgatGGTGTTCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAg < 2:1179119/149‑1 (MQ=255) atgatgGTGTTCATCAGCGTGTACCAGTC‑TTTCCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTGCCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCGGATATTGCATAATGATGCGAGATTCCcacatg > 1:1308448/1‑147 (MQ=255) ttCATCAGCGTGTACCGGTC‑TTTTCGATGCGGTGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCa < 1:801716/149‑1 (MQ=255) ttCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCCCCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCCTAATGATGCGAGATTCCCACAGGGTCAGCCCa > 2:975366/1‑149 (MQ=255) ttCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTcc > 2:98997/1‑148 (MQ=255) ttCATCAGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCa < 1:97248/149‑1 (MQ=255) tgcatcaGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCa < 1:698888/147‑1 (MQ=255) atccGCGAGGACCAGTCTTTCT‑GATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGGAACGCGCATCCAGATATTCCATAATGATGCGAGATTACCACCGGGTCAGCTCGCGa > 1:365532/1‑149 (MQ=255) atcaGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCCCGa > 2:1477683/1‑149 (MQ=255) tcaGCGTGTACCAGTC‑TTTTCGATGCGATGGATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGAt < 1:468282/149‑1 (MQ=255) tcaGCGTGTACCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGTACCGCGCGTGCAGATATTCCATAATGATGCGCGCTTCCCACAGGGTCCGCTCCCGac > 2:789868/1‑148 (MQ=255) tgtACCAG‑CCTTTTCGATGCGATGCATGTACAGACGGCCTGCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAAGGCTGCGAGATTCCCACAGGGTCAGCTCACGATccacca < 1:1237142/149‑1 (MQ=255) aCCAGTC‑TTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCAACGGCTCAGCTCGCGATCCAACgggg > 1:623371/1‑149 (MQ=255) cAGTCTTC‑TCGGTGCGATGCATGTCCGGCCGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTc < 2:1396231/149‑1 (MQ=255) | CGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTC > CP009273/3370308‑3370600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |