| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 16507 | NA (NA) | 15 (0.160) | 12/280 | 10.0 | NA | noncoding (1121/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 16511 | NA (NA) | noncoding (1125/1345 nt) | IS186 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/16355‑16507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatccagcGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCA < CP009273/16511‑16364 GTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGACAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGTCGACATAATC > 1:1194538/1‑149GTTACCGTCGGCGATGGCAAATTGAACTGGCTTTTACACGGCACAAAAT‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCAAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATC < 2:1536383/149‑1 TTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATGATCC > 1:1199838/1‑149 TACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCA < 2:137057/149‑1 TACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCA < 2:174940/149‑1 TACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCA < 1:387561/149‑1 TACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCA > 1:1548292/1‑149 TACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCGGAACTCGCGAAAGCGTGGATATTTGCTAATCTCATCGCCGCCTTTTTAATTGACCGCACAATCCA > 2:73513/1‑149 ACCGTCTGCTATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAG < 1:344040/149‑1 ACCGTCTGCGATGGCAACTTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGACCTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAG < 2:1581165/149‑1 ACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCCTTTTTCATTGACGACATACTCCAG > 1:1293749/1‑149 ACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAG < 2:980460/149‑1 CCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTATTTGACGACATAATCCAGC > 2:1521250/1‑149 CCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGC < 1:1380871/149‑1 CCGTCTCTGATGGCTAATTGAACTGGCCTTTAAGCGGCTCAAGAG‑TTTGCTGCACCTGGGTGCTTTGCGTGTAAATGAACCTGCACTCGCGAAAGCGTGGATGTTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGC < 1:126112/149‑1 CGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAGTCTCCTCGCCGCATTTTTCATTGACGACATAATCgaaccagtgat > 2:809663/1‑138 TGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGA < 1:114270/149‑1 TGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGA < 2:260481/149‑1 TGGCAAAGTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGA < 1:843578/149‑1 GCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATT < 2:764317/149‑1 CAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTA < 2:1093611/149‑1 AAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTAT < 1:1170283/149‑1 AAATTCAACCGGCTTTTAAGCGTCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACTACATAATCCAGCGATGGCTGGATTAT < 2:711071/149‑1 AATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATG > 2:717370/1‑149 ATTGAACTGGCTTTTAAGCTGCTCAAAAGTTTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTTTTTGAGTACTTAATCCAGCAATGGCTGGATTtcc > 1:630882/1‑146 ATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATGT < 2:1641932/149‑1 gTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATGTC < 1:634348/148‑1 CTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATGTCGTCAA < 1:717370/149‑1 cTTTAAGCGGCCCCAAAG‑TGGGCTGCACCTGTGTTCTTTGCGTGCAAAGGAACCTGGACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATGTCCTCAATTAAA < 1:521793/148‑1 TGCGGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGC < 1:1371514/149‑1 cGCACCGCGATGCTTTGCGTGCAAAGGAACCTGAACTGGCGAAAGCGGGGATAGTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAA < 1:73513/148‑1 AATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGC < 2:1359686/149‑1 AATCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGC < 2:920271/149‑1 TCCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCA < 1:250147/149‑1 CCAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCCAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCAT > 2:1363307/1‑149 CAGCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATC < 2:626515/149‑1 CAGCGAGGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCCCGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATC > 1:1217284/1‑149 AGCGATGGCTGGATTAGGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCG < 2:504865/149‑1 GCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGC > 2:703383/1‑149 GCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGC > 1:1264716/1‑149 GCGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGC > 2:1183233/1‑149 CGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCA > 2:521606/1‑149 CGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCA > 1:1295140/1‑149 CGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCA > 2:1262084/1‑149 GTTACCGTCTGCGATGGCAAATTGAACTGGCTTTTAAGCGGCTCAAAAG‑TTTGCTGCACCTGGATGCTTTGCGTGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCGCCGCATTTTTAATTGACGACATAATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/16355‑16507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatccagcGATGGCTGGATTATGTCGTCAATTAAAAATGCGGCGAGTAGATTAGCAAATATCCACGCTTTCGCGAGTTCAGGTTCCTTTGCACGCAAAGCATCCAGGTGCAGCAAACTTTTGAGCCGCTTAAAAGCCAGTTCAATTTGCCATCGCA < CP009273/16511‑16364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |