| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 101 (1.000) | 73/296 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 138 (1.360) | 85/296 | 0.1 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
Only 100 of 230 total aligned reads displayed.
CACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCC > CP009273/2400111‑2400405 | aactggggataacgcctgaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:976757‑M2/4‑1 (MQ=255) aCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGTTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaa < 1:1020441/149‑1 (MQ=255) aCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCCTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaa > 2:637806/1‑149 (MQ=255) aCTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAGAGTAAAAATGCATATGAGTTGCACTaa > 2:1148915/1‑149 (MQ=255) actggggataacgccttaaatggcgaagaaacggtctacataggctgattcaaggcatttacgggagaaaaaatcggctcaagcatgaagatatgaaatggctgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 1:1625633‑M2/5‑1 (MQ=255) ttATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAgg < 1:621145‑M2/149‑3 (MQ=255) ttATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAgg < 2:509034‑M2/149‑3 (MQ=255) ctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaacaatcggctcacacatgcagaaatgaaatgactgagtcagccgagacgaacaacctcccttattcgcaccttccCTaaaa < 1:837783‑M2/6‑1 (MQ=255) ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaaaaa > 1:1168021‑M2/142‑149 (MQ=255) ggggataacgccctaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaattactgagtcagccgagaagaatttccccgcctattcgcaccttccCTaaaaaa < 1:683098‑M2/8‑1 (MQ=255) gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAg < 2:469187‑M2/9‑1 (MQ=255) ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGc < 2:1601950‑M2/10‑1 (MQ=255) cATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaagg > 2:1480873‑M2/1‑143 (MQ=255) atatatTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAgggaggt < 1:820640‑M2/149‑8 (MQ=255) ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgcagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGa < 2:1371346‑M2/12‑1 (MQ=255) taacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGAc > 1:996032‑M2/137‑149 (MQ=255) tatCGCTTACTGGCGGCTCATACTTAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAACCATCCAGATGAGTTGCACTAAggaaggtgcgaac > 1:1175317‑M2/1‑136 (MQ=255) gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTcac > 1:1519553‑M2/133‑149 (MQ=255) gccttaaatggcgaagaaaaggtctaactaggctgattcaaggcatttacgggagaaaaaatcggctcaaacattaagaaatgaaatgactgagtcagccgcgaagaatttccccgcttnttcgcaccacccctaantgttgccgttct > 2:694524‑M2/133‑136 (MQ=255) ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTcaca > 1:913801‑M2/132‑149 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCCATAAggaaggtgggaacaa < 2:853296‑M2/149‑16 (MQ=255) cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACAt < 2:954285‑M2/19‑1 (MQ=255) ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcagacatgaagaaatgaaatgactgagacagccgagaagcatttccccgcttattcgcgccttccCTCAAAAAGCGACTCACAtt > 2:288095‑M2/130‑149 (MQ=255) cTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaactc < 1:370596‑M2/149‑19 (MQ=255) tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTcc < 1:1586619‑M2/25‑1 (MQ=255) tggcgaagaaacggtctaaataggctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTcc < 1:531813‑M2/25‑1 (MQ=255) aCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccct > 1:1119879‑M2/1‑128 (MQ=255) ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCg > 1:269891‑M2/124‑149 (MQ=255) tGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctga > 2:1545776‑M2/1‑126 (MQ=255) cggcTCATCCTGGGCTGGTTAATGCTGTGCACACGCAAACAAGCAATGCCATTTGTAATGTGCTTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatat > 1:30904‑M2/1‑123 (MQ=255) aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTtat < 2:1416610‑M2/30‑1 (MQ=255) cggtctaagtgggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGcc < 1:662428‑M2/36‑1 (MQ=255) aTACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatc > 1:573375‑M2/1‑117 (MQ=255) gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 2:74965‑M2/112‑149 (MQ=255) aCTGGGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTATAAATGCCTATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcat > 1:1073996‑M2/1‑115 (MQ=255) aCTGAGCTGTTTAAGGCTGTGCACACATAAACAAGCAAGTCCATTTGGAATGTGCCCACCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaactagtccctgatatgagatcat > 1:500577‑M2/1‑115 (MQ=255) aCTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcat > 2:348074‑M2/1‑115 (MQ=255) cTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt < 1:1224741‑M2/149‑41 (MQ=255) cTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt < 2:1282896‑M2/149‑41 (MQ=255) aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaataatgacactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt < 2:1200711‑M2/46‑1 (MQ=255) tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttcttcgctcgttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATcaca < 2:1550087‑M2/50‑1 (MQ=255) ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:1294756‑M2/97‑149 (MQ=255) gtgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 1:1603961‑M2/149‑53 (MQ=255) aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAAATCACAgaataaa > 2:435180‑M2/93‑147 (MQ=255) cacacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 2:1333757‑M2/149‑56 (MQ=255) cacacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccatag < 2:195499‑M2/149‑56 (MQ=255) acacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGCAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataaaac < 2:413732‑M2/149‑59 (MQ=255) acacaAACAAGCAATTCCATTTGTAATATGCCTCCCGGGCAGGTTCAGCCGGAACCCGGACGAAAGTAAAAAGGCATATGAGTTGCACGAAggaaggtgcgaacaattccctgatatgagatcatgtttgtcatctggagccatagaac < 1:1651‑M2/149‑59 (MQ=255) acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 1:401339‑M2/1‑89 (MQ=255) aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAGAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt > 2:1058851‑M2/1‑86 (MQ=255) ggagaaaaaatcggctcaaacatgcagaaatgaaatgactgagtcagccgagaacaatttccacgcttattcgcaccttccCTAAAAAAGCGACTCCCATTGTTCCGTTCTAATGCCTCAAGTAGAGCACAGCATATATCTTcagggct > 1:426944‑M2/82‑147 (MQ=255) agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:1395877‑M2/80‑149 (MQ=255) gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGATGGTTAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggggccatagaacagggttcatc < 2:323469‑M2/149‑69 (MQ=255) cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAAACCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatgtgagatcatgtttgtcatctggggccatagaacagggttcatgc < 1:13274‑M2/149‑70 (MQ=255) aaTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcctgtttgtcatctggagccatagaacaggggtcatcat < 2:583501‑M2/149‑71 (MQ=255) ttCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggggccatagaacagggttcatcatga > 2:1224741‑M2/1‑77 (MQ=255) ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAtt > 1:659504‑M2/70‑149 (MQ=255) gctcaaacacgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCCACTCACATTGTTCCGTTATACAGCCTGAAGTAGATCACCGAATATATCTTCAGGGATCGCATATCTATTa < 2:737759‑M2/81‑1 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGAATATCTAttaatg > 2:958036‑M2/66‑147 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaaataaaCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTa < 1:1383374‑M2/86‑1 (MQ=255) tCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg > 2:273550‑M2/1‑59 (MQ=255) aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCtt > 2:973324‑M2/55‑149 (MQ=255) atgaaatgactgagtcagccgagaagaatttctccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGCTACTCACTCtttt < 2:1124058‑M2/97‑1 (MQ=255) tgaaggggctgaggcggccgagaagactttccccgcttatgcgcaccttccCTAAAAAAGCGGCTCGCATTGTTCCGTTATAATGGCTGAAGTGGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc < 1:413018‑M2/98‑1 (MQ=255) aGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt < 2:600398‑M2/149‑99 (MQ=255) tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgaggcatcaacttaccttcgccgacagtgaat < 2:380555‑M2/149‑103 (MQ=255) ctgagtcagcctagaaaaatttccctgcttatcagcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCTCTCTTTTCTATTTATg < 1:288095‑M2/106‑1 (MQ=255) agctgcacccgggacgaaaGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc > 1:1153102‑M2/9‑45 (MQ=255) tCCGGAACCCGGACTAAAGTAAATACGCATATGAGTTGCACTAAggaatgtgcgaacaagtccctgataagtgatcatgtgtgtaatcgggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattca > 1:1004780‑M2/1‑44 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc > 2:870246‑M2/1‑42 (MQ=255) ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca > 2:545931‑M2/1‑41 (MQ=255) gccgaaaagactttaccagcatctacgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcgc < 2:446982‑M2/114‑1 (MQ=255) cgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgt < 1:74965‑M2/116‑1 (MQ=255) cgagaagaatttccccgcttattcacaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgt > 1:1031802‑M2/34‑149 (MQ=255) cccGGACGAAAGTAAAAATGCATTTGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa > 1:135684‑M2/1‑37 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc < 2:10012‑M2/149‑115 (MQ=255) agaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCgtgt < 2:406248‑M2/118‑1 (MQ=255) gACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatggaacagggttcatcatggctcatcaccttaccttcgccgccagtcaattcagcagtcagccg < 1:876291‑M2/149‑117 (MQ=255) gaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGt > 1:10662‑M2/28‑149 (MQ=255) aatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGta > 1:607519‑M2/27‑149 (MQ=255) ttccccgcttattcgcaccttccCTAAAAAAGCGACTCACGTTATTCCGTTATCATGCCTCAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGGGTTTCTAtaa > 2:1464299‑M2/24‑149 (MQ=255) aaaTGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccag < 2:1355788‑M2/149‑128 (MQ=255) cttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACACGCGCGTGTTTGTAtaaatgtaaa < 2:888563‑M2/133‑1 (MQ=255) ttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaat < 2:1508620‑M2/134‑1 (MQ=255) tcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATTTAAATGTGa > 1:246763‑M2/12‑149 (MQ=255) gcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGt > 1:869095‑M2/10‑149 (MQ=255) gAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaagaagatt < 1:710398‑M2/149‑138 (MQ=255) aGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccgcagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagaagtaagcgccgtcagaccagaaaagagcttt < 2:1106069‑M2/149‑139 (MQ=255) gTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:1297054‑M2/1‑10 (MQ=255) attgCACTAAgcaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:621145‑M2/2‑10 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 2:1317798‑M2/149‑141 (MQ=255) ttGCAATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc > 2:1090786‑M2/1‑9 (MQ=255) cttccCTCAAAAAGCGACTCACATTGTGCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCtt < 2:427969‑M2/144‑1 (MQ=255) cttccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACCCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCtt < 1:1444032‑M2/144‑1 (MQ=255) ccCTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGtt < 2:249100‑M2/147‑1 (MQ=255) cACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggatccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttg < 1:212890‑M2/149‑144 (MQ=255) cCTAAAAAAGCGACTCACATTTTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTTCTCACTCTTTTCTATTTATGACATCCGCGTGTTTGTCTACATGTAAATGTGAGTCCTtgtgc < 1:563546‑M2/148‑3 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacccgaaaagagattttcttgt < 1:1489853‑M2/149‑145 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc > 2:762243‑M2/1‑4 (MQ=255) cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcagctggagccatagaacagggttcatcatgagtcatcaacgtaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaatctcttttctggtc > 2:360961‑M2/1‑4 (MQ=255) | CACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCC > CP009273/2400111‑2400405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |