New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4311487 =	142 (1.210)	4 (0.030)	4/486	11.0	2.7%	coding (556/936 nt)	alsB	D‑allose ABC transporter periplasmic binding protein
	?	NC_000913	4312701 =	144 (1.240)					coding (291/891 nt)	alsR	d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAATCTGGTCATGCCTGTCGCCCGCGCATGGAAAAAAGGCATTTATCTGGTTAATCTCGATGAAAAAATCGACATGGATAATCTGAAAAAAGCTGGCGGCAATGTGGAAGCTTTTGTCACCACCGATAACGTTGCTGTCGGGGCGAAAGGCGCGTCGTTCATTATTGACAAATTGGGCGCTGAAGGTGGTGAAGTCGCAATCATTGAGGGTAAAGCCGGTAACGCCTCCGGTGAAGCGCGTCGTAATGGTGCCACCGAAGCCTTCAAAAAAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4311762‑4311487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaCTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCGGGTGCACAACTCAGGTTACCGGGTTTGAGTAACCACTCCACGATGCGGCTTTCATTTTCTGTCATTCCTTCCTGCTTCATTCGCAGGTAAGGCGCTAACCCTATACCGTTCGGAAGCGCTGAAT  >  NC_000913/4312701‑4312972                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGAATCTGGTCATGCCTGTCGCCCGCGCATGGAAAAAAGGCATTTATCTGGTTAATCTCGATGAAAAAATCGACATGGATAATCTGAAAAAAGCTGGCGGCAATGTGGAAGCTTTTGTCACCACCGATAACGTTGCTGTCGGGGCGAAAGGCGCGTCGTTCATTATTGACAAATTGGGCGCTGAAGGTGGTGAAGTCGCAATCATTGAGGGTAAAGCCGGTAACGCCTCGGGTGAAGCGCGTCGTAATGGTGCCACCGAAGCCTTCAAAAAAGCA                                                                                                                                                                                                                                                                                   >  1:1163297/1‑275         GTCATGCCTGTCGCCCGCGCATGGAAAAAAGGCATTTATCTGGTTAATCTCGATGAAAAAATCGACATGGATAATCTGAAAAAAGCTGGCGGCAATGTGGAAGCTTTTGTCAACACCGATAACGTTGCTGTCGGGGCGAAAGGCGCGTCGTTCATTATTGACAAATTGGGCGCTGAAGGTGGTGAAGTCGCAATCATTGAGGGTAAAGCCGGTAACGACTCAGGTGAAGCGCGTGGTAATGGGGCCAACGAAGCATTCAAAAAAGCAACacagat                                                                                                                                                                                                                                                                           >  2:1195138/1‑269             TGCCTGTCGCCCGCGCATGGAAAAAAGTCATTTATCTGGTTAATCTCGATGAAAAAATCGACATGGATAATGTGAAAAAAGCTGGCGGCAATGTGAAAGCTCTTGTCACCATCGAAAACGTTGCTGTCGGGGCGAAAGGCGCGTCGTTCATTATTGACAAATCTGGCGCCGGAGGGGGTGAAGTCGCAATCATTTAGGGCAAACGCGGTAACGCCACCGGTGAAGGGCGCCGAAATCGTGCCACTGAAGCCTACAAACACGCAACcacgatcagg                                                                                                                                                                                                                                                                       >  2:154242/1‑265                                                                                                                                                                 CATTATTGACAAATTGGGCGCTGAAGGTGGTGAAGTCGCAATCATTGAGGGTAAAGCCGGTAACGCCTCCGGTGAAGCGCGTCGTAATGGTGCCACCGAAGCCTTCAAAAAAGCAACTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCG                                                                                                                              >  1:801586/1‑264                                                                                                                                                                     ATTGACAAATTGGGCGCTGAAGGTGGTGAAGTCGCAATCATTGAGGGTAAAGCCGGTAACGCCTCCGGTGAAGCGCGTCGTAATGGTGCCACCGAAGCCTTCAAAAAAGCAACTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCGGGTG                                                                                                                          <  2:801586/264‑1                                                                                                                                                                                                                                                                                  aAACTCTGAAGGCAATACCTTTTCTGACTGAGAAAAATAATCTGCCAGCGGACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCGGGTGCACAACTCAGGTTACCGGGTTTGAGTAACCACTCCACGATGCGGCTTTCATTTTCTGTCATTCCTTCCTGCTTCATTCGCAGGTAAGGCGCTAACCCTATACCGTTCGGAAGCGCTGAAT  <  2:348144/274‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGAATCTGGTCATGCCTGTCGCCCGCGCATGGAAAAAAGGCATTTATCTGGTTAATCTCGATGAAAAAATCGACATGGATAATCTGAAAAAAGCTGGCGGCAATGTGGAAGCTTTTGTCACCACCGATAACGTTGCTGTCGGGGCGAAAGGCGCGTCGTTCATTATTGACAAATTGGGCGCTGAAGGTGGTGAAGTCGCAATCATTGAGGGTAAAGCCGGTAACGCCTCCGGTGAAGCGCGTCGTAATGGTGCCACCGAAGCCTTCAAAAAAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4311762‑4311487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaCTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCGGGTGCACAACTCAGGTTACCGGGTTTGAGTAACCACTCCACGATGCGGCTTTCATTTTCTGTCATTCCTTCCTGCTTCATTCGCAGGTAAGGCGCTAACCCTATACCGTTCGGAAGCGCTGAAT  >  NC_000913/4312701‑4312972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.