Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,875,521	0	T	C	21.1%	111.6 / 17.8	57	A28A (GCT→GCC)	yidX	putative lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (24/21);  new base C (12/0);  total (36/21)
Fisher's exact test for biased strand distribution p-value = 2.10e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CGCGTTTGCCGTGCGTGTAATGTAGTACAAACTTATATTGTTGTACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTAC  >  NC_000913/3875250‑3875794                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                  cgcgTTTGCCGTGCGTGTAATGTAGTACAAACTTATATTGTTGTACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTg                                                                                                                                                                                                                                                                                >  1:915165/1‑275 (MQ=255)         ccGTGCGTGTAATGTAGTACAAACTTATATTGTTGTACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCa                                                                                                                                                                                                                                                                        <  2:191318/275‑1 (MQ=255)                     tGTAGTACAAAATTATATTGTTGTATTACACTTTCGATAAAAAAAAGAGAAATGCATAAACAAATGACCTGCGTAGGTAAGAAATCGGAAAAGGGATATCAGGAGCTAAACAGGATGGAAAGAAGAGTATGCTTTCAACGGTTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTTCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGGATGCTCTGGTTTCCCATACCGCAAAggg                                                                                                                                                                                                                                                            <  2:727740/275‑1 (MQ=255)                          taCAAACTTATATTGTTGTACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTGCCATACAGCAACGGGTAGtt                                                                                                                                                                                                                                                       >  1:753663/1‑275 (MQ=255)                                         ttgtACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGTTTTCCCTTACCGCAAAGGGTAGTTCAGGAAAGTATCAAt                                                                                                                                                                                                                                        >  1:823167/1‑275 (MQ=255)                                                 cAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGTTTTCCTATACAGAAAAGGGTAGTTCAGGAAAGTATCAATCTCAGTCa                                                                                                                                                                                                                                >  1:460012/1‑275 (MQ=255)                                                   aTTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCCTCTTCTGCTTTAACACAAAGAGTAGTTCAGGAAAGTATCAATcctatgcc                                                                                                                                                                                                                                >  1:743273/1‑266 (MQ=255)                                                      tAGATTACAAAAAGAAAAAGGTATAAAAAAATGACATGGGTCGGGCAGAAATCTGAAAAGGGATATCAGTCGCTAAACAGGAGGGAAAGAAGAAGATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATGTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTGTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGacac                                                                                                                                                                                                                           <  2:921675/275‑1 (MQ=255)                                                      tAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAggg                                                                                                                                                                                                                                                            <  2:142062/242‑1 (MQ=255)                                                      tAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAggg                                                                                                                                                                                                                                                            >  1:142062/1‑242 (MQ=255)                                                         aTCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAACTATCAATCGCAGTCAGACACCAt                                                                                                                                                                                                                        >  1:90320/1‑275 (MQ=255)                                                           cacaAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTGTGGTTTCCCATAAAGCAAAGGGTAGTTAAGGAAAGTATCAATCGCAGTCAAACCCCAtaa                                                                                                                                                                                                                      >  1:988707/1‑273 (MQ=255)                                                                        aTGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTGTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCa                                                                                                                                                                                                         >  1:196151/1‑275 (MQ=255)                                                                                        cATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCCTGGTTTCCCATACCGCACAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGTCAAAAGATAGTAAt                                                                                                                                                                                         >  1:881891/1‑275 (MQ=255)                                                                                                 ggCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGC‑TTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCCGTCAGACACAAACACTGGGCTATCGCAGGCAAAAGATAGTa                                                                                                                                                                                           >  1:622946/1‑263 (MQ=255)                                                                                                     gAAATCGGAAAAGGAATATCAGGCGCTAAACAAGAGGGAAATAAGAGTATGCTTT‑AACGGCTTAGCTACTCGGTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGAGGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCGATCGCAGGCAAAAGATAGTAATgg                                                                                                                                                                                       <  2:622946/263‑1 (MQ=255)                                                                                                                                           aaaGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTGTGGTTTCCCATACCGCAAAAGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACt                                                                                                                                      >  1:902454/1‑275 (MQ=255)                                                                                                                                                   gTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCg                                                                                                                                                                                                                                      >  1:93350/1‑171 (MQ=255)                                                                                                                                                    tATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGTTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGTCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTCCCTTATCACTGATGGTGcc                                                                                                                             >  1:842037/1‑275 (MQ=255)                                                                                                                                                    tATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTCGTTTCCCATACCGCAAAAGGTAGTACAGGAAAGAATCAATCGCAGACAGACACCATCACTGGGCTATCACAGGCAAAAGATAGTAATGAAACACAAGGCTATGTTGTTGTAGGGGAATCGCGGGATTGCCTTATCAGTGATggggac                                                                                                                             >  1:729189/1‑271 (MQ=255)                                                                                                                                                     aTGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTCTTCTGCTTTAAAAAAAAGAGTAGTTCAGGAAAGTATCAATCGCAGTCAGACAACATCACTGGGCTCTCGCAGGCAAAAGATAGTCATGGACACAAAGGCTATGTTTTTGTAGGGTAATCGCTGGATTACATTATCCTTGACGGTGCCg                                                                                                                            >  1:1129407/1‑275 (MQ=255)                                                                                                                                                       gCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGt                                                                                                                                                                                                                                  <  2:93350/171‑1 (MQ=255)                                                                                                                                                         tttCAAAGGGTTAGGTAGTCGTTTAAAGGATTATTGTTGATGTGTAATTTTAAGTGATTTTTTAAGGCTGCCGGTTTTTTCCCACGGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAGAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGa                                                                                                                        <  2:11885/275‑1 (MQ=255)                                                                                                                                                          tttaaCGGCTTATGTAGTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGAGCTGATGCTTTCAGGCTGTATCTAGTATGGTCTGGGTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGTGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGa                                                                                                                        <  2:706949/271‑1 (MQ=255)                                                                                                                                                          ttaaatggCTTAGCTACGTGGTTAAAGGATGAAGCATGAAGTTGAATTTTAATGGATTTTTTAAGGGTGCCGGTTTATTCCCACTGGAGCTGATGCTTTCAGGCTGTATTTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTGCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGa                                                                                                                        <  2:753663/268‑1 (MQ=255)                                                                                                                                                          ttCAATGGCTTAGGCTCTCGTTTTAATGATGATTCCTGAAGTGGAAGTTGAAGTGCTTATTTAAGGCTGCCGGTGTAGTCCCAATGGGTCTGATGCTTTCAGGATGAATCGCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCATACACCATCACTGGTCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCGGGATTACCTTATCACTGATGGTGCCGATGAc                                                                                                                       <  2:881891/275‑1 (MQ=255)                                                                                                                                                                        tatgcttttAAAGGATTAATGAGGGTGGTGAATTTTTGGAGTTTTGTTAATGCTGCCAGTTTAGTCCTACTGTCGCTGAGGCTTTCAAGCTGAATCTCGTATGCTCTGAGTTCCCATACCTCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACCCCATCACGGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAATGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCt                                                                                                         <  2:915165/269‑1 (MQ=255)                                                                                                                                                                           tCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATAACGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCaa                                                                                                      >  1:163197/1‑275 (MQ=255)                                                                                                                                                                           acgattAAAGGAGTAACCATGAAGCTGAATTTTAAGGTATTTTTTGAGGCTGTCGGTTTATGCCCACAGGCGCTGATGCTGTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGAAACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTGTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCaa                                                                                                      <  2:90320/271‑1 (MQ=255)                                                                                                                                                                            cGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCCTGTTTTCCCATAACGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGATGGATTACCTTATCACTGATGGTGCCGATTACTTCGTTAAGATGccaaa                                                                                                      >  1:609708/1‑270 (MQ=255)                                                                                                                                                                                               gAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGttt                                                                                                                                                                                                                                                                            >  1:729146/1‑89 (MQ=255)                                                                                                                                                                                               gAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCCTGTTTTCCCATACCGCAAAGAGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAAcc                                                                                     >  1:679428/1‑272 (MQ=255)                                                                                                                                                                                                aatttGAATTTTAAGGGATTGTTTAAGGCTGACGGTTTATTCCCACGGTCCCTTATGCTTTCAGGCTGGATCTCGTATGCTCTGCTTTCCCATTCCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCATACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGca                                                                                 <  2:679428/272‑1 (MQ=255)                                                                                                                                                                                                aaGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACAATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCAATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGAAATCGTTAAGATTCTAAATGAGCCAGCACTTAACTGGca                                                                                 >  1:1164661/1‑275 (MQ=255)                                                                                                                                                                                                   ttGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCa                                                                                                                                                                                                                                                                        <  2:729146/89‑1 (MQ=255)                                                                                                                                                                                                           tAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCa                                                                                                                                        >  1:455038/1‑209 (MQ=255)                                                                                                                                                                                                             aGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAACGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGtt                                                                                                                 >  2:628181/1‑230 (MQ=255)                                                                                                                                                                                                                 aTTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGa                                                                                                             <  1:628181/230‑1 (MQ=255)                                                                                                                                                                                                                           gCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTGTTCTGCCTTACCGCAAAAGGTAGTTAAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATACAGCACTTAACCGGCACAATATTCAGGTTGCCGATGCAGCAAg                                                      >  1:303001/1‑275 (MQ=255)                                                                                                                                                                                                                              gCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGAtt                                                   >  2:48254/1‑275 (MQ=255)                                                                                                                                                                                                                               ccGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATAc                                                                                                                                                                                                                                                                     >  2:345802/1‑64 (MQ=255)                                                                                                                                                                                                                               ccGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTACAGGAAAGTATCAATCGAAGTCAGAAACCATCCCTGGGCTATCCCAGGCAAACGATAGAAAAGGAACAAAAGGCTATGTTTATGTAGGGGAAACGCTGGATAACATTAACACTATTGTTGCCGAGCACATCATTAAGAACATCAATATAACAGCACTTAACCGGAACAATATTTAGTATCCCGATGAcaacacattg                                                  >  2:96628/1‑266 (MQ=255)                                                                                                                                                                                                                               ccGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTCTTCTGCCTTACAAAAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAACGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGAACAATATTCAGGTTGACGATGACGCAAGAttt                                                  >  1:1117809/1‑275 (MQ=255)                                                                                                                                                                                                                                   tttATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCa                                                                                                                                                                                                                                                                 <  1:345802/64‑1 (MQ=255)                                                                                                                                                                                                                                            aCTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTCTTTTGCCATACAACAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCgg                                     >  1:800962/1‑275 (MQ=255)                                                                                                                                                                                                                                            aCTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCGTCTTCTGCTTTAAAAAAAAAGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTTATGGTGCAGATGACATCGTTAAGATGCCCAATGATCCAGCACTTAACCGGCACAATATTCAGGGTGCCGATGAGGCAAGATTTGTTTTACATGCgg                                     >  1:1053297/1‑275 (MQ=255)                                                                                                                                                                                                                                            aCTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCCCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCCCTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCgg                                     >  1:360479/1‑275 (MQ=255)                                                                                                                                                                                                                                                 cgcTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGCTTTGTTTTCAATGCggggta                                 >  2:736644/1‑272 (MQ=255)                                                                                                                                                                                                                                                           ttCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGa                                                                                                                           >  2:171125/1‑174 (MQ=255)                                                                                                                                                                                                                                                            ttcggCTGTATTTCGTATGCTCTGGTTTCCCATACCGCAAAGCGTAGTTCAGGAAAGTATCAATCTCAGTCATACACCAGCACTGGGCTATCGCAGGCAAAAGATAGGAATGGAACAAAAGGCTATGTTTTTGTAGGTGAAGCGATTGATTACCTTATCACTGCTGGTGCCGATGACATCGTTAAGATGCTCAATGTTCCTGCTCTTAACCGGCACAATATTCAGGTGGCCGATGACGCAAGATTGGTTTTTAATGTGGGGAAAAATGAATTTAc                     <  2:303001/272‑1 (MQ=255)                                                                                                                                                                                                                                                               ggCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGAc                                                                                                                       <  1:171125/174‑1 (MQ=255)                                                                                                                                                                                                                                                                gCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCGGGGAAAAAGAAATTTACCgg                  <  1:48254/274‑1 (MQ=255)                                                                                                                                                                                                                                                                   gTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGACAGATTTGTTTTAAATGCGGGGAAAAAGAAATTTACCggacaa              >  2:764306/1‑271 (MQ=255)                                                                                                                                                                                                                                                                    tATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCATGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAATAAAAGGCTATGCTGTTGTAGGGGAATCGCTGCATTACCTTATCACTGATGGTGCCGATGACCTCGCTAATATGCTCAATGATCCAGCACTTAACCGGCAAAATCTTCAGGTTCCCGATTACGCAAGATTTGTTTGAAATGCGGGGAAAAAGAAATTAACCGGAACaa             >  2:295553/1‑275 (MQ=255)                                                                                                                                                                                                                                                                        tcGTATGCTTTGGTGTCACATACCGCAAAGTGGAGTTCATGAAAGTATAAATCGACGGCAGAGACCATCACTTGGCTAACGAAGGCAAAAGAAAGTAATGGAAAAAAAGGATATGTTGTTGTAGGGGAAGCGGTGTATTACCTTATCACTGATGGTGCAGAGGACATCGTTAAGATGCTTAATCATCCAGCACTTAACCGTAAAAATATACAGGTTGCCGATGACGCAAGATTTGTTTTGAAGGCGGGGAAAAAGAAATTTACCGGCACAatat          <  2:196151/274‑1 (MQ=255)                                                                                                                                                                                                                                                                        tcGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCGGGGAAAAAGAAATTTACCGGCACAatat          <  1:736644/274‑1 (MQ=255)                                                                                                                                                                                                                                                                              gCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAgggg                                                                                                                                                             >  2:857022/1‑121 (MQ=255)                                                                                                                                                                                                                                                                               gtctGGTTTCCCATACCCGAACGGGTAGTTCAGGAAAGTATAAATCGAAGGCAGACACAATCACTGGTCTATCGAAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTGTTGTAGGGGAATCGCTGGATTACCTTATCACGGATGGTGCCGATGACAGCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTAAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTtac  <  2:823167/274‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                  CGCGTTTGCCGTGCGTGTAATGTAGTACAAACTTATATTGTTGTACTACAATTTAGATCACAAAAAGAACAATGCATAAAAAAATGACATGCGTCGGGCAGAAATCTGAAAAGGGATATCAGGCGCTAAACAGGAGGGAAAGAAGAGTATGCTTTCAACGGCTTAGCTACTCGTTTAAAGGATTAATCATGAAGTTGAATTTTAAGGGATTTTTTAAGGCTGCCGGTTTATTCCCACTGGCGCTGATGCTTTCAGGCTGTATCTCGTATGCTCTGGTTTCCCATACCGCAAAGGGTAGTTCAGGAAAGTATCAATCGCAGTCAGACACCATCACTGGGCTATCGCAGGCAAAAGATAGTAATGGAACAAAAGGCTATGTTTTTGTAGGGGAATCGCTGGATTACCTTATCACTGATGGTGCCGATGACATCGTTAAGATGCTCAATGATCCAGCACTTAACCGGCACAATATTCAGGTTGCCGATGACGCAAGATTTGTTTTAAATGCGGGGAAAAAGAAATTTACCGGCACAATATCGCTTTAC  >  NC_000913/3875250‑3875794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑