mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 26.3% | 14.5 / 10.9 | 19 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 4 (0.030) | 3/430 | 12.9 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3536900 | 117 (0.840) | 4 (0.030) | 4/494 | 13.2 | 3.5% | coding (89/477 nt) | greB | transcript cleavage factor |
| ? | NC_000913 | = 3536907 | 109 (0.810) | coding (96/477 nt) | greB | transcript cleavage factor | |||||
| * | ? | NC_000913 | 762116 = | 116 (0.830) | 3 (0.020) | 3/480 | 13.7 | 2.3% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 144 (1.100) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | = 4498394 | 21 (0.150) | 5 (0.040) | 3/486 | 13.8 | 19.9% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498760 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3186309 | 7 (0.050) | 5 (0.040) | 3/486 | 13.8 | 42.8% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3186675 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2997112 = | NA (NA) | 5 (0.040) | 3/486 | 13.8 | 30.3% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2997478 = | 12 (0.090) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2069692 = | NA (NA) | 5 (0.040) | 3/486 | 13.8 | 24.6% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2070058 = | 16 (0.120) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1468661 = | NA (NA) | 5 (0.040) | 3/486 | 13.8 | 22.5% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1469027 = | 18 (0.130) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381473 | 4 (0.030) | 5 (0.040) | 3/486 | 13.8 | 56.6% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381839 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 399248 = | 128 (0.920) | 3 (0.020) | 3/490 | 13.9 | 2.9% | coding (86/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | NC_000913 | 399640 = | 74 (0.550) | coding (48/213 nt) | yaiZ | DUF2754 family putative inner membrane protein | |||||