New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4532138	142 (1.520)	3 (0.030)	3/488	9.3	2.5%	pseudogene (173/261 nt)	yjhY	pseudogene, zinc finger protein family
	?	NC_000913	= 4532518	98 (1.080)					coding (666/747 nt)	yjhP	putative methyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCTGAATAGATTCAGAGGGAGTATAGATAATCAGCTCAAATCACTCTCCGCTTTATGAGCCCAGGCTGGCATTGCCGTCAGATAACGTTTTGCACGCTTATGTGCTTCCTCCGGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4531863‑4532138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgaACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTATGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCTTGCGGAATGCCGATGTCGGCACCAGATGCACACAGT  <  NC_000913/4532518‑4532245                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCTGAATAGATTCAGAGGGAGTATAGATAATCAGCTCAAATCACTCTCCGCTTTATGAGCCCAGGCTGGCATTGCCGTCAGATAACGTTTTGCACGCTTATGTGCTTCCTCCGGGCCG                                                                                                                                                                                                                                                                                     >  1:826110/1‑275                                                                                                                                                                            GAGGGAGTATAGATAATCAGCTCAAATCACTCTCCGCTTTATGAGCCCAGGCTGGCATTGCCGTCAGATAACGTTTTGCACGCTTATGTGCTTCCTCCGGGCCGAACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAA                                                                                                                                                                    >  1:697565/1‑217                                                                                                                                                                                GAGTATAGATAATCAGCTCAAATCACTCTCCGCTTTATGAGCCCAGGCTGGCATTGCCGTCAGATAACGTTTTGCACGCTTATGTGCTTCCTCCGGGCCGAACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATC                                                                                                                                                                <  2:697565/217‑1                                                                                                                                                                                                                                                                            CCGGGCGGAACTAAACATCGGGCCGAAACGCTACCTGAGCTACGCGCGGGAATGCTTTGGCTGTGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTATGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCTTGCGGAATGCCGATGTCGGCACCAGATG          <  2:925289/275‑1                                                                                                                                                                                                                                                                                GCCGGACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTATGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCTTGCGGAATGCCGATGTCGGCACCAGATGCACA      <  1:517038/275‑1                                                                                                                                                                                                                                                                                GCCGAACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCCGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTATGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCTTGCGGAATGCCGATGTCGGCACCAGATGCACA      <  1:784316/275‑1                                                                                                                                                                                                                                                                                    AACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTCTGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCCTGCGGAATGCCGATGTCGGCACCCGATGCACACAGT  >  2:236414/1‑275                                                                                                                                                                                                                                                                                    AACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTATGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCTTGCGGAATGCCGATGT                      >  1:411957/1‑255                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGCTCCCTCTTCATTACGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCTGAATAGATTCAGAGGGAGTATAGATAATCAGCTCAAATCACTCTCCGCTTTATGAGCCCAGGCTGGCATTGCCGTCAGATAACGTTTTGCACGCTTATGTGCTTCCTCCGGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4531863‑4532138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccgaACTAAACATCGCGCCGAAACGCTACGTGACCTACGCGCGGGAATGCTTTGGCTGGGGCGTGTTCGCACTCATCGCCCGGTAACAACAGGTTCCCGGTATTTCTGGCTGGAAATATCGAGGCTTTACCTTTGCTTTGATCTGATGTATCACCTGCACAATACATATTCAGTATGTTTATTAATCAAGATGTCACCATAAGGAGCATCATATGTCACAACATGAACAGTTCTGTCAGGCTTGCGGAATGCCGATGTCGGCACCAGATGCACACAGT  <  NC_000913/4532518‑4532245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.