mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 24.7% | 103.6 / 36.8 | 75 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 14 (0.110) | 3/390 | 12.5 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 762116 = | 122 (0.830) | 7 (0.050) | 4/440 | 12.7 | 5.0% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 153 (1.110) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | = 4498394 | 14 (0.100) | 6 (0.040) | 4/446 | 12.8 | 31.0% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498760 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3186309 | 4 (0.030) | 6 (0.040) | 4/446 | 12.8 | 61.2% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3186675 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2997112 = | NA (NA) | 6 (0.040) | 4/446 | 12.8 | 38.6% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2997478 = | 10 (0.070) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2855847 = | 165 (1.130) | 4 (0.030) | 4/446 | 12.8 | 2.7% | coding (1510/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator |
| ? | NC_000913 | 2856093 = | 136 (0.980) | coding (1756/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator | |||||
| * | ? | NC_000913 | 2069692 = | NA (NA) | 6 (0.040) | 4/446 | 12.8 | 29.6% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2070058 = | 15 (0.100) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1468661 = | NA (NA) | 6 (0.040) | 4/446 | 12.8 | 32.6% | noncoding (580/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1469027 = | 13 (0.090) | noncoding (214/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381473 | 5 (0.030) | 6 (0.040) | 4/446 | 12.8 | 55.7% | noncoding (214/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381839 | NA (NA) | noncoding (580/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3594002 = | 159 (1.090) | 4 (0.030) | 4/460 | 13.1 | 2.6% | coding (205/768 nt) | livG | branched‑chain amino acid ABC transporter ATPase |
| ? | NC_000913 | 3594366 = | 142 (0.990) | coding (1115/1278 nt) | livM | branched‑chain amino acid ABC transporter permease | |||||