mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,528,563 | 0 | A | C | 53.3% | 1.4 / 10.7 | 15 | pseudogene (662/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 1,311,197 | 0 | G | T | 23.9% | 361.6 / 27.8 | 178 | E37* (GAA→TAA) | tonB | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.4% | 242.4 / 58.3 | 121 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2765420 = | 220 (0.910) | 7 (0.040) | 7/370 | 15.1 | 3.8% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 176 (0.900) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4037225 = | NA (NA) | 7 (0.030) | 7/440 | 16.9 | 7.1% | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | 4037228 = | 95 (0.390) | intergenic (+11/‑32) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427065 | 0 (0.000) | 7 (0.030) | 7/440 | 16.9 | 100% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | 225468 = | 68 (0.280) | 7 (0.030) | 7/440 | 16.9 | 9.7% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913 | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913 | 603377 = | 285 (1.180) | 6 (0.030) | 5/430 | 18.1 | 2.2% | intergenic (+42/+39) | pheP/ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| ? | NC_000913 | 603410 = | 262 (1.160) | intergenic (+75/+6) | pheP/ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance | |||||
| * | ? | NC_000913 | = 550488 | 208 (0.860) | 5 (0.020) | 5/440 | 18.3 | 2.5% | coding (50/894 nt) | ybcF | putative carbonate kinase |
| ? | NC_000913 | = 550538 | 186 (0.800) | coding (100/894 nt) | ybcF | putative carbonate kinase | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 18 (0.090) | 3/380 | 18.4 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 1070548 = | 249 (1.030) | 5 (0.020) | 5/444 | 18.4 | 2.1% | coding (408/591 nt) | rutE | putative malonic semialdehyde reductase |
| ? | NC_000913 | 1070576 = | 224 (0.960) | coding (380/591 nt) | rutE | putative malonic semialdehyde reductase | |||||
| * | ? | NC_000913 | = 1179937 | 193 (0.800) | 6 (0.030) | 5/450 | 18.5 | 3.1% | coding (307/729 nt) | cobB | deacetylase of acs and cheY, chemotaxis regulator |
| ? | NC_000913 | = 1179938 | 187 (0.790) | coding (308/729 nt) | cobB | deacetylase of acs and cheY, chemotaxis regulator | |||||
| * | ? | NC_000913 | = 3392102 | 271 (1.130) | 5 (0.020) | 3/392 | 18.7 | 2.1% | noncoding (27/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | NC_000913 | 3392377 = | 239 (1.160) | noncoding (302/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||