Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 40 [0] [0] 40 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)37 (0.370) 32/454 1.9 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAA  >  NC_000913/1979036‑1979527
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                        
cgggaagacccgggaaaaaataattagcattggaatagttgcgataagctgcaataagcagaacaacatttttggttgaatatgtccgtacaaatagaaatagttctttccacttatctaagatttttcctaaagagacgcaactgtactcgtcactacactcacatacaacggaggggggctgcgattgtcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                                                                                                                                   <  2:578760‑M2/8‑1 (MQ=255)
    aagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                                                                                                                               <  2:254404‑M2/12‑1 (MQ=255)
                                gaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                                                                                                                                   <  1:261270‑M2/40‑1 (MQ=255)
                                        gttgagagtagacctgagcggaaccccctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctgaatcgacgtgactgtgctcgtcactacacgcacatgcaacgaaggggggctgcgattttcaataatgcgtgatgcagaacacacaagacactcaaatacgtaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGtt                                                                                                                                                                                                           <  1:1089613‑M2/48‑1 (MQ=255)
                                              agctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                                                                                                                                                                     >  1:743052‑M2/198‑251 (MQ=255)
                                                        agcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgaagcaactgtactcgtcactacacgcacatacaacggaggggggccgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTAACACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                                                                                                                                                                           >  2:261328‑M2/188‑251 (MQ=255)
                                                                       ttggtttaatatgtccttacaaatagaaatgggtctttacacttatctcagatttttcctaaatcgacgcaactgtactcgtcactacaagcaaatacaacggaggggggctgcgatttccaataacgcgtgatgcagaccacacaaaacactcaattacttaacataaatgTAAAAGTCATCATTTCGTTTTGGGTGTCTTGCAATTTGTTTAAAAGTTTTTCGTTACGCTAGCAAGCAAAAAtgaaata                                                                                                                                                                            >  2:920419‑M2/173‑249 (MQ=255)
                                                                               atatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcttcactacacgcacatacaacggaggggggctgcgatcttcaataaggagtgatgcagaccacacaaaacacccaattacttaacataactgTATAAGTCCTACTTTTGTTTTTGGTGTATTTCAATACGttaaaaattttttcgcttcgctaacaatacaaaacctctccttatatac                                                                                                                                                                    >  2:1089780‑M2/165‑229 (MQ=255)
                                                                                                  aatgggtctttacacttatctaagatttttactaaatcgacgcaactgtactcgtcactacacgcacatacaaccgagggggtctgagattttcaagaatgcgtgatgcagatcacaccaaacaatcaattccttaacataaatgTATAAGTCATACTTATATTTTGGGTGTATTTAAATCTGGTAAAAAGTTGTTCGCTACGCTCGCAAGCAAAAATGAACAAGGAATAATCGAAATGGGATGTTGGGca                                                                                                                                                 >  2:1012055‑M2/146‑251 (MQ=255)
                                                                                                      ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                                                                                                                                                                             >  1:11389‑M2/142‑155 (MQ=255)
                                                                                                      ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcatgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                                             >  1:883353‑M2/142‑251 (MQ=255)
                                                                                                       gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                                                                                                                             <  1:1000202‑M2/78‑1 (MQ=255)
                                                                                                                   atctaagatttttcctgtatcgacccaactgtactcgtcactacacgaccatacaacggagaggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGATGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAGTCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                                                                                                                                <  1:920268‑M2/123‑1 (MQ=255)
                                                                                                                   atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATGAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                                                                                                                                <  2:365021‑M2/123‑1 (MQ=255)
                                                                                                                   atctaaaatttttcccaaatcgacgcaacctgtctcgtcaccacccgcacatacaacggaggggggctgctattttcaataatgcgtgatggagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                                                                                                                                <  2:900742‑M2/123‑1 (MQ=255)
                                                                                                                     ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTATTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCGAGCAAGCAAAAATGAAACTGGACTAATCGAAAAGGGATGTTGCGCAAAGACAAACTAACTCACCg                                                                                                                              >  2:406263‑M2/127‑251 (MQ=255)
                                                                                                                        agatttttcctaaaccgacgcaactgtactcgtcactacacgcacatacaatggaggggggctgcgttctctaataaagtctgatgcagagcacacagaacacttaattacttaatttaaaagCAAAAGTCATACTTTTGTTTTGGGGGTATTCCATTCTGTTAAAAAGCTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAAAATCCAAATGGGAAGTTGCGCATCGTCAAAATAACTCatcggca                                                                                                                           >  1:291778‑M2/124‑248 (MQ=255)
                                                                                                                         gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTGTGATTTTGGTGTATTTCAATTTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCAAAGTCAAAATAACTCACCGTaaa                                                                                                                          >  2:1094071‑M2/123‑251 (MQ=255)
                                                                                                                         gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcatgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                                                                                                                          <  2:883502‑M2/129‑1 (MQ=255)
                                                                                                                               tcctaaatcgacgcaactgtacttgtcactacacgcacatacaacggaggggggatgcgattttcaataatgcgtgatgcagatcaaacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGCAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca                                                                                                                    >  1:900591‑M2/117‑251 (MQ=255)
                                                                                                                               tcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg                                                                                                                                                     >  2:1000364‑M2/117‑218 (MQ=255)
                                                                                                                                cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                                   >  1:364945‑M2/116‑251 (MQ=255)
                                                                                                                                 ctaaatcgccgcaactgtacacctcactacacggacatgcaacagcgcggggctgcaattttcaataatgcgtgatgcagatcacacaaagcactcaaatgcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAGAGTTTTTCGCTACGCTAACAAACAAAAATGAAACAGGAATAATCGAAGTGTTATGTTGCGCACAGTCAAAATAACTCACCTTAAATAatcatc                                                                                                                  <  1:974734‑M2/137‑1 (MQ=255)
                                                                                                                                           gcaactttactcgtccctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgttgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                        <  2:474169‑M2/147‑1 (MQ=255)
                                                                                                                                              actgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa                                                                                                                            <  1:547535‑M2/127‑1 (MQ=255)
                                                                                                                                                      cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCa                                                                                             >  1:474059‑M2/94‑251 (MQ=255)
                                                                                                                                                                cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                                                                                                                              <  1:320612‑M2/93‑1 (MQ=255)
                                                                                                                                                                    catacaacggaggggggctgcgattttcaagaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATa                                                                               <  1:1093904‑M2/172‑1 (MQ=255)
                                                                                                                                                                      tactaccgtggggggctgccattttcaataatgcgtgatgcaggtcacacaaaccacgcgattactttacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATTAAACTGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTAACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAg                                                                             <  2:584103‑M2/174‑1 (MQ=255)
                                                                                                                                                                      tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGATAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGCTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATc                                                                                                    >  2:547649‑M2/78‑228 (MQ=255)
                                                                                                                                                                                           ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTa                                                        <  2:743182‑M2/195‑1 (MQ=255)
                                                                                                                                                                                                                      acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaa                             >  1:513784‑M2/30‑251 (MQ=255)
                                                                                                                                                                                                                           acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat                                                                                                            <  2:463312‑M2/143‑1 (MQ=255)
                                                                                                                                                                                                                                       ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAAc            >  1:538237‑M2/13‑251 (MQ=255)
                                                                                                                                                                                                                                        taacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACt           <  1:406182‑M2/240‑1 (MQ=255)
                                                                                                                                                                                                                                          acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCa                                                                                                   <  2:494236‑M2/152‑1 (MQ=255)
                                                                                                                                                                                                                                          acagaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGacac                                                           <  2:251961‑M2/192‑1 (MQ=255)
                                                                                                                                                                                                                                           cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                                                                                                                                <  1:389527‑M2/123‑1 (MQ=255)
                                                                                                                                                                                                                                                 tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACACTAGCAAACAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa  <  1:408320‑M2/249‑1 (MQ=255)
                                                                                                                                                                                                                                                   tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAACGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGATGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAcc                                                                                    >  1:463210/1‑167 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                        
GGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAA  >  NC_000913/1979036‑1979527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: