mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 41.3% | 101.5 / 164.4 | 143 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 274695 | NA (NA) | 8 (0.070) | 8/286 | 13.7 | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3632752 = | 125 (1.080) | 6 (0.060) | 6/270 | 14.4 | 5.0% | intergenic (‑162/+100) | yhiJ/yhiL | DUF4049 family protein/pseudogene, DUF4049 family protein |
| ? | NC_000913 | 3632789 = | 112 (1.060) | intergenic (‑199/+63) | yhiJ/yhiL | DUF4049 family protein/pseudogene, DUF4049 family protein | |||||
| * | ? | NC_000913 | 1396498 = | NA (NA) | 7 (0.060) +CGC |
7/288 | 14.4 | 4.9% | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428369 | 138 (1.200) | noncoding (426/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4542690 | 144 (1.250) | 6 (0.060) | 6/276 | 14.6 | 4.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 130 (1.200) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 845565 = | 101 (0.880) | 9 (0.080) | 6/274 | 14.6 | 8.7% | intergenic (‑85/+176) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit |
| ? | NC_000913 | 845589 = | NA (NA) | intergenic (‑109/+152) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit | |||||
| * | ? | NC_000913 | = 1751528 | 95 (0.820) | 6 (0.050) | 6/280 | 14.8 | 6.2% | coding (197/648 nt) | ydhW | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | = 1751544 | 91 (0.830) | coding (181/648 nt) | ydhW | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 7 (0.060) | 6/280 | 14.8 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 2630917 | 100 (0.870) | 5 (0.050) | 5/270 | 15.1 | 5.1% | intergenic (+52/+41) | yfgI/guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| ? | NC_000913 | = 2630921 | 95 (0.900) | intergenic (+56/+37) | yfgI/guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) | |||||
| * | ? | NC_000913 | 4306827 = | 124 (1.080) | 5 (0.050) | 5/272 | 15.2 | 4.5% | intergenic (‑230/+43) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase |
| ? | NC_000913 | 4306864 = | 100 (0.940) | intergenic (‑267/+6) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase | |||||
| * | ? | NC_000913 | = 715221 | 120 (1.040) | 6 (0.060) | 5/272 | 15.2 | 5.0% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913 | = 715231 | 116 (1.090) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||