| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2330390 = | 28 (0.770) | 6 (0.180) | 6/242 | 3.6 | 16.0% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | 2330449 = | 37 (1.100) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATGAACTGGCTGGCGAAATATATGGCGACAATGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAACTGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2330482‑2330390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCGGCCGTCTGGGTAGCGTCGCCACCGCTATTAAGCAGCACAACCGTGTGCGCCAGCGGCTGA > NC_000913/2330449‑2330596 CATGAACTGGCTGGCGAAATATATGGCGACAATGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAA < 3:138264/86‑1CATGAACTGGCTGGCGAAATATATGGCGACAATGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAA > 4:138264/1‑86 CGACAATGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAA > 4:37240/1‑148 TGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCG < 3:37240/149‑1 TGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGA < 5:70095/118‑1 TGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGA > 6:70095/1‑118 CTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGCTAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCGGCC > 8:112839/1‑149 TGGGCTAAACATAAGCTAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCGGCCGTCTGGGTAGCGTCGCCACCGCTATTAAGCAG < 7:112839/149‑1 GAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCGGCCGTCTGGGTAGCGTCGCCACCGCTATTAAGCAGCACAACCGTGTGCGCCAGCGG < 2:133840/148‑1 GCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCGGCCGTCTGGGTAGCGTCGCCACCGCTATTAAGCAGCACAACCGTGTGCGCCAGCGGCTGA < 2:24956/149‑1 CATGAACTGGCTGGCGAAATATATGGCGACAATGCCTCCAGTTGTTTTGCCTGCGCCTGCGGGCGCATGGGCTAAACATAAGTTAACTGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2330482‑2330390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGGTCAAACCACTTAAAATAGCGGCCGTCTGGGTAGCGTCGCCACCGCTATTAAGCAGCACAACCGTGTGCGCCAGCGGCTGA > NC_000913/2330449‑2330596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |