Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 911,086 IS2 (–) +5 bp 100% intergenic (‑37/+92) poxB ← / ← hcr pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)31 (0.380) 28/248 NT 100% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 911086 = 0 (0.000)intergenic (‑37/+96) poxB/hcr pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent
* ? NC_000913 = 382590NA (NA)85 (1.050) 57/246 NT 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 = 911090 0 (0.000)intergenic (‑41/+92) poxB/hcr pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent

Only 100 of 134 total aligned reads displayed.

GACTGTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAGCAGGCCAGTACGTAA  >  NC_000913/910944‑911233
                                                                                                                                                  |                                                                                                                                               
gACTGTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGt                                                                                                                                                <  6:350821‑M2/148‑2 (MQ=255)
  cTGTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtg                                                                                                                                               <  6:258780‑M2/147‑3 (MQ=255)
    gTCACTAAGACCTTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCTCCCCTGCCGATTCGAGTGATTTGGCGATATAAGCTGCAACCTTTTGTTTCTGGGTTGTACATCTCATGAATGTGATAACGTTATCAAGTTTAg                                                                                                                                                 >  8:124129/1‑143 (MQ=255)
    gTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggat                                                                                                                                            <  2:23627‑M2/148‑6 (MQ=255)
     tCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggat                                                                                                                                            >  4:71299‑M2/1‑142 (MQ=255)
          aaGACCGTTCAGATAGTCTCCTGTGACTACCAAGATTCGTTTCACCCCTGCCTATTCGAGTGTTTTGGCGATTTAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCAGAATGTGATAACTGTAACAAGTTTAGtggatttgccc                                                                                                                                      <  1:291777‑M2/148‑12 (MQ=255)
           aGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcc                                                                                                                                       >  4:97590‑M2/1‑136 (MQ=255)
                cgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAgggg                                                                                                                                <  3:330203‑M2/22‑1 (MQ=255)
                  tCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatattt                                                                                                                              <  8:68422‑M2/148‑20 (MQ=255)
                  tCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatattt                                                                                                                              <  2:214740‑M2/148‑20 (MQ=255)
                   ctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACgg                                                                                                                                     >  8:8694‑M2/124‑140 (MQ=255)
                      cgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAggg                                                                                                                          <  3:285564‑M2/28‑1 (MQ=255)
                      agagTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttc                                                                                                                             <  2:104466‑M2/145‑21 (MQ=255)
                        tttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGAt                                                                                                                        <  6:186957‑M2/30‑1 (MQ=255)
                         ttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGaa                                                                                                                             <  5:299177‑M2/25‑1 (MQ=255)
                         ttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGaa                                                                                                                             >  6:299177‑M2/118‑142 (MQ=255)
                         ttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATg                                                                                                                       >  4:203080‑M2/118‑148 (MQ=255)
                         gTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagaca                                                                                                                       >  1:104466‑M2/1‑122 (MQ=255)
                              cggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttctttaagtgatattggttgtcgggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGgag                                                                                                                   <  1:222602‑M2/35‑1 (MQ=255)
                              cggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATggg                                                                                                                     <  4:358089‑M2/33‑1 (MQ=255)
                                gtgACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgc                                                                                                                                        <  7:184019‑M2/124‑10 (MQ=255)
                                gtgACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgc                                                                                                                                        >  8:184019‑M2/1‑115 (MQ=255)
                                gccctaagacatcaatcatctgttctccaatgactagtataaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGgagaga                                                                                                                <  3:203080‑M2/38‑1 (MQ=255)
                                 tgACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgtt                                                                                                                 >  1:44961‑M2/1‑114 (MQ=255)
                                     aagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagttataatggtagtctggagattcagggggccagtctaTTTAGTTCATCTGACGGATTGGGAAGGGATGGGAGAGAAag                                                                                                             >  2:346765‑M2/106‑146 (MQ=255)
                                      ccccAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAAACGTTTGTTTCCCGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggagttgcccctatatttccagacagctgttataact                                                                                                           <  6:137679‑M2/147‑39 (MQ=255)
                                       cccAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcactta                                                                                                         <  8:276226‑M2/148‑41 (MQ=255)
                                        ccAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgtta                                                                                                                <  3:230298‑M2/140‑34 (MQ=255)
                                        acatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGc                                                                                                        <  3:57792‑M2/46‑1 (MQ=255)
                                           gATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                     >  1:23627‑M2/1‑104 (MQ=255)
                                           gATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                     >  1:214740‑M2/1‑104 (MQ=255)
                                           gATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGATTCACGGTTCTACATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgaccctatatttccagacatctgttatcacttaaccc                                                                                                     >  5:137679‑M2/1‑104 (MQ=255)
                                            aTGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                    <  3:312887‑M2/148‑46 (MQ=255)
                                               cGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccatt                                                                                                  >  4:19867‑M2/1‑100 (MQ=255)
                                                    cACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagc                                                                                            <  7:147003‑M2/148‑54 (MQ=255)
                                                     aCCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagc                                                                                            >  3:55391‑M2/1‑94 (MQ=255)
                                                      ttctccaatgactagtctaaaaactagtattaagactatcacttatttacgtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTaa                                                                                            <  1:141980‑M2/58‑1 (MQ=255)
                                                      atctccaatgactagtctaaaaactagtagtaagactctcacttatttatgtgatatttgttgtctggagattcagggggccacgctaATAACTTCATCTTAAGGCGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTaaa                                                                                           <  6:295167‑M2/59‑1 (MQ=255)
                                                       cccGGCCGATTCGAGTGTTTTTGCGATATAAGCTGCAAGCGTTTGTTTCATGGTTCTCCATCTGCTGAATGTTATAAGGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaccccattacaagcccg                                                                                         >  4:169910‑M2/1‑92 (MQ=255)
                                                          tGCCGATTCGAGTGTTTTGGCGATATAAGCCGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg                                                                                      <  7:143432‑M2/148‑60 (MQ=255)
                                                           gCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc                                                                                     <  4:286611‑M2/148‑61 (MQ=255)
                                                           gCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc                                                                                     <  3:193945‑M2/148‑61 (MQ=255)
                                                            ccGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg                                                                                      >  5:258780‑M2/1‑87 (MQ=255)
                                                            ccGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcact                                                                                                           <  3:223979‑M2/125‑39 (MQ=255)
                                                            ccGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcact                                                                                                           >  4:223979‑M2/1‑87 (MQ=255)
                                                               gactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATATCCCGAt                                                                                  >  6:108526‑M2/80‑147 (MQ=255)
                                                                ttCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccg                                                                                   <  1:283797‑M2/145‑63 (MQ=255)
                                                                   gAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgc                                                                                        <  6:192839‑M2/137‑58 (MQ=255)
                                                                      ctaaaaactagtattaagactatcacttattttagtgatattggttgtctggagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTATCGGTTAAATAGCCCGATGAAAGGaa                                                                          >  3:268964‑M2/73‑148 (MQ=255)
                                                                         tttGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg                                                                       <  4:253073‑M2/148‑75 (MQ=255)
                                                                         tttGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg                                                                       <  8:259952‑M2/148‑75 (MQ=255)
                                                                         tttGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgt                                                                                                                  <  3:295415‑M2/105‑32 (MQ=255)
                                                                         tttGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgt                                                                                                                  >  4:295415‑M2/1‑74 (MQ=255)
                                                                         tttGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctg                                                                                                                   <  6:357803‑M2/104‑31 (MQ=255)
                                                                         tttGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctg                                                                                                                   >  5:357803‑M2/1‑74 (MQ=255)
                                                                         aaaactagtattaagactatcccttatttaagtgatattggttgtatgtagattcagggggccagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAatat                                                                       <  2:203043‑M2/79‑1 (MQ=255)
                                                                               agtattaagactatcacttatttaagtgatattggttgtctggagattcagggggcgagtctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCgg                                                                 >  1:319644‑M2/64‑148 (MQ=255)
                                                                                atatAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgag                                                                >  4:312887‑M2/1‑67 (MQ=255)
                                                                                  ataAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagc                                                               <  4:319809‑M2/147‑83 (MQ=255)
                                                                                  ataAGCTGCAACAGTTTGTTTCATTGTTCTCCATCTCCTGAATGTGATAACGGTAACATGTTTAGttgatttgcccctatatttccagacatctgttatcacttaacccattacaagaactctgcctcagatattccggtggcgagcg                                                              >  2:291777‑M2/1‑65 (MQ=255)
                                                                                         gCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatc                                                                                                              <  7:75759‑M2/93‑36 (MQ=255)
                                                                                         gCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatc                                                                                                              >  8:75759‑M2/1‑58 (MQ=255)
                                                                                           aaCCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattac                                                                                                <  5:143944‑M2/105‑50 (MQ=255)
                                                                                            aCCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagc                                                    <  8:3856‑M2/148‑94 (MQ=255)
                                                                                              cGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctgtatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgc                                                  >  5:270109‑M2/1‑53 (MQ=255)
                                                                                                  tgtttCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                               >  7:259952‑M2/1‑49 (MQ=255)
                                                                                                  tgtttCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                               >  8:147003‑M2/1‑49 (MQ=255)
                                                                                                     ttCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgca                                                                                 <  7:94843‑M2/110‑65 (MQ=255)
                                                                                                     acagtgctattggttgcctggagattcaggggcccaggctaTTTACTCCATCTGACGGAGGGGCACGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCgaga                                            <  5:350817‑M2/106‑1 (MQ=255)
                                                                                                        aTGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg                                         >  3:319809‑M2/1‑43 (MQ=255)
                                                                                                        aTGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg                                         >  7:68422‑M2/1‑43 (MQ=255)
                                                                                                        aTGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg                                         >  4:80463‑M2/1‑43 (MQ=255)
                                                                                                        aTGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                    >  7:71881‑M2/1‑43 (MQ=255)
                                                                                                          ggTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgc                                                  >  3:151348‑M2/1‑41 (MQ=255)
                                                                                                          ggTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgc                                                  <  4:151348‑M2/136‑96 (MQ=255)
                                                                                                           attttggttgtctggcgattccgggggccagtctaATAAGTTCATCAGACGCAGGCGCAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCaa                                       <  3:268719‑M2/111‑1 (MQ=255)
                                                                                                            ttCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcc                                    >  7:3856‑M2/1‑39 (MQ=255)
                                                                                                                 cATCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                               >  1:108915‑M2/1‑34 (MQ=255)
                                                                                                                  aTCTCCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgt                              <  6:284446‑M2/148‑116 (MQ=255)
                                                                                                                    ctcCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta                            <  6:272417‑M2/148‑118 (MQ=255)
                                                                                                                    ctcCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg                                         >  1:91671‑M2/1‑31 (MQ=255)
                                                                                                                    ctcCTGAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata                                                           >  8:120151‑M2/1‑31 (MQ=255)
                                                                                                                    ctcCTGAATGTGAAAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgg                                         <  2:46654‑M2/135‑105 (MQ=255)
                                                                                                                         gagattccgggggccaggctcTTTAGTTCAGCTGACGGTGGGGGCCGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATgg                       <  2:319644‑M2/127‑1 (MQ=255)
                                                                                                                         gAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                               <  3:289687‑M2/124‑99 (MQ=255)
                                                                                                                         gAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                               >  4:289687‑M2/1‑26 (MQ=255)
                                                                                                                         gAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagat                                                                              <  1:52232‑M2/93‑68 (MQ=255)
                                                                                                                         gAATGTGATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagat                                                                              >  2:52232‑M2/1‑26 (MQ=255)
                                                                                                                              tgATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcga                  >  3:95439‑M2/1‑21 (MQ=255)
                                                                                                                              tgATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcga                  >  7:276226‑M2/1‑21 (MQ=255)
                                                                                                                              tgATAACGGTAACAAGTTTAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcga                  >  5:284446‑M2/1‑21 (MQ=255)
                                                                                                                                          tctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATccccc                                >  1:339313‑M2/5‑122 (MQ=255)
                                                                                                                                           ctaTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAGCAGGCCAGTACg     >  3:133624‑M2/4‑148 (MQ=255)
                                                                                                                                            tatttAGTTCATCTGGCGTAGGGGGATGGGTTGTGAGAGAAAGGAGGAACTAACGGTTAAATAGCACGAGGTAAGGAATATCATCGGGAATAAGTAGATTATGCGAGAACCAAATCACCATGCGGATGGCAGTAGCAGTCCAGTAAGt    <  4:268964/146‑1 (MQ=255)
                                                                                                                                              tttAGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggtt  <  3:294486‑M2/148‑144 (MQ=255)
                                                                                                                                              tttAGTTCATCTGACGGAGGGGGAAGGCATGGGAGAGAAAGGAGGCACAAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACAAAATCCACCTGCGGATGGCAGGAGCAGGCCAGTACGTaa  >  1:256671/1‑148 (MQ=255)
                                                                                                                                               ttAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAg                 >  5:298546/1‑132 (MQ=255)
                                                                                                                                               ttAGTTCATCTGAAGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAGCAGGCCAGTACGTaa  <  2:308784/147‑1 (MQ=255)
                                                                                                                                                  gTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAGCAGGCCAg         >  4:5927/1‑137 (MQ=255)
                                                                                                                                                  gTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAGCAGGCCAg         <  3:5927/137‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                               
GACTGTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTCATGGTTCTCCATCTCCTGAATGTGATAACGGTAACAAGTTTAGTTCATCTGACGGAGGGGGAAGGGATGGGAGAGAAAGGAGGCACTAACGGTTAAATAGCCCGATGAAAGGAATATCATCGGGCATAAGGCGATTATGCGAGAACCAAATCCCCCTGCGGATGGCAGGAGCAGGCCAGTACGTAA  >  NC_000913/910944‑911233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.