mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 987,420 | 0 | A | C | 29.4% | 20.6 / 11.5 | 17 | intergenic (‑438/+165) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 987,422 | 0 | G | T | 29.4% | 25.1 / 10.5 | 17 | intergenic (‑440/+163) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 987,424 | 0 | A | T | 29.4% | 18.2 / 10.2 | 17 | intergenic (‑442/+161) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.120) | 4/246 | 3.0 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3114381 = | NA (NA) | 3 (0.100) +25 bp |
3/214 | 3.1 | NA | noncoding (4/168 nt) | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4285379 | NA (NA) | intergenic (‑166/+34) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913 | = 2118649 | NA (NA) | 3 (0.100) +24 bp |
3/216 | 3.1 | NA | noncoding (184/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 4285379 | NA (NA) | intergenic (‑166/+34) | yjcH/acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase | |||||
| * | ? | NC_000913 | 2250162 = | 50 (1.350) | 4 (0.110) | 3/250 | 3.4 | 7.3% | coding (446/1050 nt) | yeiH | UPF0324 family inner membrane protein |
| ? | NC_000913 | 2250201 = | 54 (1.540) | coding (485/1050 nt) | yeiH | UPF0324 family inner membrane protein | |||||
| * | ? | NC_000913 | = 1570072 | 36 (0.970) | 3 (0.090) | 3/248 | 3.4 | 8.0% | coding (418/1536 nt) | gadC | glutamate:gamma‑aminobutyric acid antiporter |
| ? | NC_000913 | = 1570122 | 35 (1.010) | coding (368/1536 nt) | gadC | glutamate:gamma‑aminobutyric acid antiporter | |||||
| * | ? | NC_000913 | 1516656 = | 59 (1.590) | 3 (0.090) | 3/250 | 3.4 | 5.0% | coding (1079/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase |
| ? | NC_000913 | 1516683 = | 57 (1.630) | coding (1106/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 12 (0.340) | 3/252 | 3.4 | 92.6% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 1 (0.030) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 12 (0.340) | 3/252 | 3.4 | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1068360 | 23 (0.620) | 4 (0.110) | 3/250 | 3.4 | 14.6% | noncoding (7/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 1068371 | 25 (0.710) | noncoding (18/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 884909 = | 22 (0.590) | 3 (0.090) | 3/246 | 3.4 | 11.2% | intergenic (+4/+37) | mdfA/ybjH | multidrug efflux system protein/uncharacterized protein |
| ? | NC_000913 | 884940 = | 27 (0.780) | intergenic (+35/+6) | mdfA/ybjH | multidrug efflux system protein/uncharacterized protein | |||||