New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2940113 =	30 (0.860)	5 (0.150)	5/240	3.7	15.8%	intergenic (+14/+30)	fucR/rlmM	l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
	?	NC_000913	2940137 =	25 (0.760)					intergenic (+38/+6)	fucR/rlmM	l‑fucose operon activator/23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAATCGTTGTTATTGATTGATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCAT  >  NC_000913/2939970‑2940261                                                                                                                                                |                                                                                                                                                     gcAATCGTTGTTATTGATTGATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCg                                                                                                                                                 <  5:26851/149‑1 (MQ=255)   aaTCGTTGTTATTGATTGATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGga                                                                                                                                               <  5:144535/149‑1 (MQ=255)                 attgatAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGc                                                                                                                                       >  1:112963/1‑143 (MQ=255)                 attgatAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGc                                                                                                                                       <  2:112963/143‑1 (MQ=255)                               aTTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGTGACGACGCCCCGGCCTTGCCTGTTATCg                                                                                                                   <  4:26745/149‑1 (MQ=255)                                             gggAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGcc                                                                                                                                                  <  1:102277/104‑1 (MQ=255)                                             gggAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGcc                                                                                                                                                  >  2:102277/1‑104 (MQ=255)                                              ggAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGacc                                                                                                    >  3:112754/1‑149 (MQ=255)                                               gAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGacca                                                                                                   <  8:135115/149‑1 (MQ=255)                                                     cGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACcacccacc                                                                                             >  1:185550/1‑149 (MQ=255)                                                            ggCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAATGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGccc                                                                                      <  4:112754/149‑1 (MQ=255)                                                             gCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCtt                                                                                                                              >  2:42014/1‑108 (MQ=255)                                                             gCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCtt                                                                                                                              <  1:42014/108‑1 (MQ=255)                                                             gCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGcc                                                                                       >  1:99669/1‑147 (MQ=255)                                                                                    ttattTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCa                                                              <  2:185550/149‑1 (MQ=255)                                                                                           tgatgaGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACttcttc                                                       >  3:75594/1‑149 (MQ=255)                                                                                            gatgaGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTcg                                                      >  8:84791/1‑149 (MQ=255)                                                                                                 gcgcCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATc                                                 <  4:75594/149‑1 (MQ=255)                                                                                                             aaCTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc                                                                                                             >  4:79956/1‑77 (MQ=255)                                                                                                             aaCTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCtcgtc                                                                                                             <  3:79956/77‑1 (MQ=255)                                                                                                                  cttTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCAACGTCACTTCTTCGCGATCGTGATACAACTGCcgc                                 <  2:99669/148‑1 (MQ=255)                                                                                                                   tttGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCActtctt                                                        >  5:88440/1‑124 (MQ=255)                                                                                                                   tttGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCActtctt                                                        <  6:88440/124‑1 (MQ=255)                                                                                                                             gCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCTCCTGAATCTGa                     <  7:84791/149‑1 (MQ=255)                                                                                                                               cTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGGCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGa                     >  7:62770/1‑147 (MQ=255)                                                                                                                               cTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGGCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGa                     <  8:62770/147‑1 (MQ=255)                                                                                                                               cTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTg                                     <  4:64039/131‑1 (MQ=255)                                                                                                                               cTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTg                                     >  3:64039/1‑131 (MQ=255)                                                                                                                                 gACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGAACACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATc                                                 <  7:91514/117‑1 (MQ=255)                                                                                                                                 gACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGAACACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATc                                                 >  8:91514/1‑117 (MQ=255)                                                                                                                                                aGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTtcat  >  5:135891/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GCAATCGTTGTTATTGATTGATAAAAGTAAATTTAATCGTTCAGGGGAAGCCCGCATCGGGCATCTGGATGAGGTAACGCACATTATTTCTGATGAGCGCCAGGTTGCAACTTCTTTGGTAACAGCCTGACGGAAAGGGTAGCAGGCCGGAGACGACGCCCCGGCCTTGCCTGTTATCGCTCGTCGCGACGACCACCCACCGCAGCCCAGATGCGGCGGACGTGCACCGTCACTTCTTCGCGATCGTGATACAACTGCCGCGCCTGAATCTGAGCATTTATGCCATGTTCAT  >  NC_000913/2939970‑2940261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.