Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)38 (1.320) 33/252 0.1 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 = 291401NA (NA)39 (1.350) 33/252 0.1 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 1293032 = 0 (0.000)intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/291277‑291401
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGAC  >  NC_000913/1293032‑1293179
                                                                                                                                                                                                                                                                                 
TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTT                                                                                                                              <  4:126242/149‑1
     tttCCGTTACGAACCACCACTTCATTAGCAGAACAGGAGGGACATCTGATAGAAACAGAAGCCACTTTAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCAT                                                                                                                           <  3:104235/144‑1
      TGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAA                                                                                                                         >  5:57032/1‑148
         CGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAAT                                                                                                                      >  1:94255/1‑148
               GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTA                                                                                                                    >  6:6811/1‑144
               GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTA                                                                                                                    <  5:6811/144‑1
                 ACCACCCCGTCAGTAGATGAACAGGAGGGACAGCTGATAGAAACAGAAGCCCCTGGAGCACCTCAAAAACACCATCATACACTACATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCAGAAAATTAGCCAGA                                                                                                              >  3:6760/1‑148
                   CACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTT                                                                                                                              >  1:65686/1‑130
                   CACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTT                                                                                                                              <  2:65686/130‑1
                        CGTCATTAGTTTAACATGAGGGACAGCTGATAGAAACAGAAGCGACTGGAGCACCTCAAAAACAACATCATACACTAAATCTGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAta                                                                                                                       <  4:85713/132‑3
                        CGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGAATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAA                                                                                                                       >  3:85713/1‑132
                              TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATA                                                                                                >  4:57359/1‑149
                                GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATA                                                                                              <  2:94255/149‑1
                                       AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAT                                                                                       >  5:76308/1‑149
                                                 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGAT                                                                             <  6:57032/149‑1
                                                  CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGAT                                                                             >  2:59876/1‑148
                                                          AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCA                                                                    <  3:57359/149‑1
                                                                 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGT                                                              >  6:55267/1‑148
                                                                          GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAA                                                     >  1:74999/1‑148
                                                                              CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGTAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGC                                                                                                   >  4:81716/1‑98
                                                                              CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGTAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGC                                                                                                   <  3:81716/98‑1
                                                                              CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTC                                                >  1:68589/1‑149
                                                                              CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTC                                                >  6:4831/1‑149
                                                                              CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTC                                                >  2:51785/1‑149
                                                                                 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCC                                               <  5:4831/147‑1
                                                                                  AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGA                                            <  5:55267/149‑1
                                                                                       ACCATCATACACTAAATCACTCAGTTTGCAGCATCACATTGTGCCGCCAATCAATCTCTTTTCATAAAATTAGCCAGAAAAGACGCTGCATATATCCCTAATTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAT                                       <  4:6760/149‑1
                                                                                         CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGC                                                                                                      <  5:134418/84‑1
                                                                                         CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGC                                                                                                      >  6:134418/1‑84
                                                                                              TACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAGAAGACGCGGCATATAGC                                                                                            >  3:44919/1‑89
                                                                                              TACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAGAAGACGCGGCATATAGC                                                                                            <  4:44919/89‑1
                                                                                              TACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATT                                                                                      >  7:80346/1‑95
                                                                                              TACACTAAATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATT                                                                                      <  8:80346/95‑1
                                                                                                     AATCAGTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGG                         <  6:76308/149‑1
                                                                                                          GTAAGTTGGCAGCATCACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGG                        >  8:8085/1‑145
                                                                                                                  GCAGCATCACCTTGTGCCGCCAATAAATATCTCTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATC               <  4:117054/146‑1
                                                                                                                  GCAGCATCACCTTGTGCCGCCAATAAATATCTCTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATC               >  3:117054/1‑146
                                                                                                                          ACCTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGAC     <  1:51785/148‑1
                                                                                                                            CTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGAC  >  5:33744/1‑149
                                                                                                                                                                                                                                                                                 
TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/291277‑291401
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGAC  >  NC_000913/1293032‑1293179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.